BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg337040 Length=522 Score E Sequences producing significant alignments: (Bits) Value AT1G49150.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 198 4e-50 > AT1G49150.1 | Symbols: | unknown protein; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18178577-18179023 FORWARD LENGTH=447 Length=447 Score = 198 bits (107), Expect = 4e-50 Identities = 166/192 (86%), Gaps = 13/192 (7%) Strand=Plus/Plus Query 163 ATGGAAGAAAAGATGGA-CATGTTGATCTCATTGGTTAGGTCAAATAATGAAGTTAAAAT 221 |||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||| Sbjct 163 ATGGAAGAGAAGATGGATC-TGTTGATCTCATTGTTTAGGTCAAATAATGAAGTTAAAAT 221 Query 222 TGGCTTTGTAAAGGCCGAGGCAGAGAGCATGTTTGAGGATGAATCATCCTT-TGATGATG 280 ||||| ||||||| || ||||||||||||||| || ||||| |||||| || |||||| | Sbjct 222 TGGCTCTGTAAAGCCC-AGGCAGAGAGCATGTCTGTGGATGGATCATC-TTCTGATGAGG 279 Query 281 AACCTTATAGCCGttttggtccttttgtcggtggtc--g-tggtg-t--tggtcctttt- 333 |||||||||||||||||||| || |||| ||||| | ||||| | ||||| |||| Sbjct 280 AACCTTATAGCCGTTTTGGTACTCCTGTCTTTGGTCCTGGTGGTGGTCGTGGTC-TTTTC 338 Query 334 gtcggtggtcgt 345 |||||||||||| Sbjct 339 GTCGGTGGTCGT 350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24966371059 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5