BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337040
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49150.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 198 4e-50
> AT1G49150.1 | Symbols: | unknown protein; Has 6 Blast hits to
6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:18178577-18179023 FORWARD LENGTH=447
Length=447
Score = 198 bits (107), Expect = 4e-50
Identities = 166/192 (86%), Gaps = 13/192 (7%)
Strand=Plus/Plus
Query 163 ATGGAAGAAAAGATGGA-CATGTTGATCTCATTGGTTAGGTCAAATAATGAAGTTAAAAT 221
|||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct 163 ATGGAAGAGAAGATGGATC-TGTTGATCTCATTGTTTAGGTCAAATAATGAAGTTAAAAT 221
Query 222 TGGCTTTGTAAAGGCCGAGGCAGAGAGCATGTTTGAGGATGAATCATCCTT-TGATGATG 280
||||| ||||||| || ||||||||||||||| || ||||| |||||| || |||||| |
Sbjct 222 TGGCTCTGTAAAGCCC-AGGCAGAGAGCATGTCTGTGGATGGATCATC-TTCTGATGAGG 279
Query 281 AACCTTATAGCCGttttggtccttttgtcggtggtc--g-tggtg-t--tggtcctttt- 333
|||||||||||||||||||| || |||| ||||| | ||||| | ||||| ||||
Sbjct 280 AACCTTATAGCCGTTTTGGTACTCCTGTCTTTGGTCCTGGTGGTGGTCGTGGTC-TTTTC 338
Query 334 gtcggtggtcgt 345
||||||||||||
Sbjct 339 GTCGGTGGTCGT 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5