BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337048
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49250.1 | Symbols: | ATP-dependent DNA ligase | chr1:18220... 1166 0.0
AT1G08130.1 | Symbols: ATLIG1, LIG1 | DNA ligase 1 | chr1:25427... 902 0.0
> AT1G49250.1 | Symbols: | ATP-dependent DNA ligase | chr1:18220533-18224256
FORWARD LENGTH=1974
Length=1974
Score = 1166 bits (631), Expect = 0.0
Identities = 732/780 (94%), Gaps = 10/780 (1%)
Strand=Plus/Plus
Query 602 CTGTATATAACGAAGAGCATTCAAAGCCACCCCCAAATATCAAGAATCCTTTAGATGAGG 661
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 671 CTGTATATAACGAAGAGCATTCTAAGCCGCCCCCAAATATCAAGAATCCTTTAGATGAGG 730
Query 662 CTGCAACGATTGTTAAAGAAGTATTCTCTGTGCTTCCTGTCTACGACCTTATTGTTGGTG 721
|||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 731 CTGCAACGATTGTTAAAGAAGTATTCTCAATGCTTCCTGTCTATGACATTATTGTTGGTG 790
Query 722 CTCTTCTAACTAGTGGTGTGTGGAATCTTCCTAAAACTTGTAAACTTACAC-CGGGTGTC 780
||||||||||||||||||| ||||||||||||||||||||||| || |||| | |||||
Sbjct 791 CTCTTCTAACTAGTGGTGTATGGAATCTTCCTAAAACTTGTAACCTCACACTC-GGTGTT 849
Query 781 CCAGTTAGACCCAGGCTTGCAAAAGCAACTACAAGTGTAGATCTCATACTTGAGAAATTC 840
|||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 850 CCAGTTAGGCCCATGCTTGCAAAAGCAACTACAAGAGTAGATCTCATACTTGAGAAATTC 909
Query 841 GGGGACACCGTTTTCACAGCTGAATACAAATATGATGGTGAACGTGCACAGATACATTAT 900
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 910 AAGGACACTGTTTTCACAGCTGAATACAAATATGATGGTGAACGTGCACAGATATATTAT 969
Query 901 ATGGAGGATGGTACAATCGAGATATTCAGTAGACATGCTGAAAGAAACACTGGCAAGTAC 960
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ATGGAGGATGGTACAGTCGAGATATTCAGTAGACATGCTGAAAGAAACACTGGCAAGTAC 1029
Query 961 CCTGATGTTGCTCTTGCGTTATCAAGGTTTAAGAAGCCCGCTGTAAAATCTTTTATTCTG 1020
|||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 1030 CCTGATGTTGCTCTTGTGTTATCAAGGTTAAAGAAGCCCACTGTGAAATCTTTTATTCTG 1089
Query 1021 GATTGCGAGGTTGTTGCCTTCAACAGGGAGGAAA-AGAAAATTCTTCCGCTCCAGACTTT 1079
|||||||||||||| |||||||||| || ||| ||||||||||||| ||||||| |
Sbjct 1090 GATTGCGAGGTTGTCACCTTCAACAGAGA-AAAAGAGAAAATTCTTCCACTCCAGA--GT 1146
Query 1080 GAGCACTCGAGCCCATAAAAATGTGAATGTCAGTGATATCAAGGTTGGCGTATATGTCTT 1139
| || |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1147 -A-CA--CGAGCCCATAAAAATGTGAATGTCAGTGATATCAAGGTTGGCGTATGCGTCTT 1202
Query 1140 TGCTTTTGATATATTATATCTAAATGGCCAACTACTTATCCAGGAGAATCTGAATATTCG 1199
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1203 TGCTTTTGATATATTATACCTAAATGGCCAACTACTTATCCATGAGAATCTGAACATTCG 1262
Query 1200 CCGAGAGAAGCTATACGATTCATTTGAGGAAGATCCTGGGTATTTCCAATTTGCAACTGC 1259
||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1263 CCGAGAGAAGCTACACGATTCATTTGAGGAAGATCTTGGGTATTTCCAGTTTGCAACTGC 1322
Query 1260 TCTAACATCCAACGATATTGGTGAATTACAAGAGTTTCTTAAAGCTTCTATTGACATTGG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1323 TCTAACATCCAACGATATTGGTGAATTACAAGAGTTTCTTAAAGCTTCTATTGACATAGG 1382
Query 1320 ATGTGAAGGTTTAATGATAAAGTCATTGTACTCGAATGCAACCTATGAGCCTGCAAAGAG 1379
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1383 ATGTGAAGGTTTAATGATAAAGTCATTGTACTCAAATGCAACCTATGAGCCTGCAAAGAG 1442
Score = 713 bits (386), Expect = 0.0
Identities = 459/494 (93%), Gaps = 6/494 (1%)
Strand=Plus/Plus
Query 1380 CATTGGAGATTCTGTGGATCTAGTACCAATTGCGGCTTTCCATGGACGTGGGAAACGCAC 1439
|||||||||||| |||||||| |||||||| || | |||||||||||||||||||||||
Sbjct 1485 CATTGGAGATTCCGTGGATCTTGTACCAATAGCTACGTTCCATGGACGTGGGAAACGCAC 1544
Query 1440 AGGTTTCTTTGGTGCATTTTTACTAGCGTGCTACGATGTCGACAAGGAAGAATTCCAGAG 1499
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 1545 AGGTTTCTTTGGTGCATATTTACTAGCGTGCTACGATGTTGATAAGGAAGAATTCCAGAG 1604
Query 1500 CATTTGTAAAATTGGTACTGGATTTTCTGACGCGGAGCTTCAAGAGCTGTCTTCCAGTCT 1559
|||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||
Sbjct 1605 CATTTGTAAAATTGGTACTGAATTTTCTGATGTGGAGCTTCAAGATTTGTCTTCCAGTCT 1664
Query 1560 TTTCTCTAAAGTGATTGCTA-TACCAAAACAATACTACCAAGTCGATGACGGTCTCAATC 1618
|| ||||||||||||||||| | || ||||||||||||||||||||| ||| ||||||||
Sbjct 1665 TTGCTCTAAAGTGATTGCTACT-CCGAAACAATACTACCAAGTCGATAACGATCTCAATC 1723
Query 1619 CAGATGTCTGGTTGGAGCCCACCGAGGTGTGGGAAGTGAAAGCAGCTGACTTGACAATTA 1678
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1724 CAGATGTCTGGTTGGAGCCCACCGAGGTGTGGGAAGTGAAAGCAGCTGACTTGACAGTTA 1783
Query 1679 GCCCTGTACATCGTGCAGCTATCGGAATTGTGGACCCTGATAAGGGAATTTCTCTACGTT 1738
|||||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 1784 GCCCTGTATATCGTGAAGCTATTGGAATTGTGGACCCTGACAAGGGAATTTCTCTACGAT 1843
Query 1739 TTCCTCGTTTAGTCCGTGTGCGGAAAGACAAGAATCCAGAGGAAGCAACATCATCTGACC 1798
|||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 1844 TTCCTCGTCTAGTCCGTATACGGAAAGACAAGAATCCAGAGGAAGCAACAACATCTGACC 1903
Query 1799 AGATTGCTGAAATGTATCAAGCTCAGAAAAACACAATCAACCAAGCAATCAAGGCAAAGG 1858
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1904 AGATTGCTGAAATGTATCAAGCTCAGAAA--CACAATCAACCAAGCAATCAAGGCAAAG- 1960
Query 1859 TG-ACGACGGTTGA 1871
|| |||||| ||||
Sbjct 1961 TGGACGACGATTGA 1974
> AT1G08130.1 | Symbols: ATLIG1, LIG1 | DNA ligase 1 | chr1:2542702-2547946
REVERSE LENGTH=2715
Length=2715
Score = 902 bits (488), Expect = 0.0
Identities = 686/782 (88%), Gaps = 12/782 (2%)
Strand=Plus/Plus
Query 602 CTGTATATAACGAAGAGCATTCAAAGCCACCCCCAAATATCAAGAATCCTTTAGATGAGG 661
|||||||||| |||||||| ||||||||||||||||||| |||| ||||||||| ||||
Sbjct 1195 CTGTATATAATGAAGAGCACTCAAAGCCACCCCCAAATACCAAGTCTCCTTTAGAAGAGG 1254
Query 662 CTGCAACGATTGTTAAAGAAGTATTCTCTGTGCTTCCTGTCTACGACCTTATTGTTGGTG 721
|||||| |||||||||| |||||||| |||| ||||||||||| ||| |||||||| ||
Sbjct 1255 CTGCAAAGATTGTTAAACAAGTATTCACTGTACTTCCTGTCTATGACATTATTGTTCCTG 1314
Query 722 CTCTTCTAACTAGTGGTGTGTGGAATCTTCCTAAAACTTGTAAAC-TTACACCGGGTGTC 780
||||||||| | | ||||||||||||||||| ||||||||| ||| ||||| ||||||
Sbjct 1315 CTCTTCTAAGTGGCGGTGTGTGGAATCTTCCAAAAACTTGT-AACTTTACATTGGGTGTT 1373
Query 781 CCAGTTAGACCCAGGCTTGCAAAAGCAACTACAA-GTGTAGATCTCATACTTG-AGAAAT 838
||| || |||||| |||||||||| |||| | || |||||| | |||| || | ||||
Sbjct 1374 CCAATTGGACCCATGCTTGCAAAACCAACCA-AAGGTGTAGCTGAGATAC-TGAATAAAT 1431
Query 839 TCGGGGACACCGTTTTCACA-GCTGAATACAAATATGATGGTGAACGTGCACAGATACAT 897
|| ||||| |||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 1432 TCCAGGACATCGTTTTCACATG-TGAATACAAATATGATGGGGAACGTGCACAGATACAT 1490
Query 898 TATATGGAGGATGGTACAATCGAGATATTCAGTAGACATGCTGAAAGAAACACTGGCAAG 957
| |||||||||||||||| | ||||||| |||| || ||||||||||||||||||| |||
Sbjct 1491 TTTATGGAGGATGGTACATTTGAGATATACAGTCGAAATGCTGAAAGAAACACTGGGAAG 1550
Query 958 TACCCTGATGTTGCTCTTGCGTTATCAAGGTTTAAGAAGCCCGCTGTAAAATCTTTTATT 1017
||||| ||||||||||||||||||||||| || |||||||| |||| ||||||||||||
Sbjct 1551 TACCCGGATGTTGCTCTTGCGTTATCAAGATTAAAGAAGCCTTCTGTGAAATCTTTTATT 1610
Query 1018 CTGGATTGCGAGGTTGTTGCCTTCAACAGGGAGGAAAAGAAAATTCTTCCGCTCCAGACT 1077
|||||||| || |||||||| ||| |||||||| ||||||||||||||||| |||||| |
Sbjct 1611 CTGGATTGTGAAGTTGTTGCTTTCGACAGGGAGAAAAAGAAAATTCTTCCGTTCCAGATT 1670
Query 1078 TTGAGCACTCGAGCCCATAAAAATGTGAATGTCAGTGATATCAAGGTTGGCGTATATGTC 1137
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1671 TTGAGCACTCGAGCCCGTAAAAATGTGAATGTCAATGATATCAAGGTTGGCGTATGCATC 1730
Query 1138 TTTGCTTTTGATATATTATATCTAAATGGCCAACTACTTATCCAGGAGAATCTGAATATT 1197
||||||||||| || ||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 1731 TTTGCTTTTGACATGTTATATCTAAATGGCCAACAACTTATCCAGGAGAATCTTAAAATT 1790
Query 1198 CGCCGAGAGAAGCTATACGATTCATTTGAGGAAGATCCTGGGTATTTCCAATTTGCAACT 1257
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1791 CGCCGAGAGAAGCTATACGAATCATTTGAGGAAGATCCTGGGTATTTCCAGTTTGCAACT 1850
Query 1258 GCTCTAACATCCAACGATATTGGTGAATTACAAGAGTTTCTTAAAGCTTCTATTGACATT 1317
||| ||||||| |||||||| | |||| ||||| |||||||| | |||||| |||| ||
Sbjct 1851 GCTGTAACATCTAACGATATCGATGAAATACAAAAGTTTCTTGACGCTTCTGTTGATGTT 1910
Query 1318 GGATGTGAAGGTTTAATGAT-AAAGTCATTGTACTC-GAATGCAACCTATGAGCCTGCAA 1375
|| || ||||||||||| || ||| ||||| |||| || ||| ||||||||||||||||
Sbjct 1911 GGCTGCGAAGGTTTAATCATTAAAA-CATTGGACTCAGA-TGCTACCTATGAGCCTGCAA 1968
Query 1376 AG 1377
||
Sbjct 1969 AG 1970
Score = 558 bits (302), Expect = 6e-158
Identities = 437/502 (87%), Gaps = 10/502 (2%)
Strand=Plus/Plus
Query 1378 AGCATTGGAGATTCTGTGGATCTAGTACCAATTGCGGCTTTCCATGGACGTGGGAAACGC 1437
|||||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 2013 AGCATTGGGGACTCTGTGGATCTTGTACCAATTGCTGCTTTCCATGGACGTGGAAAACGC 2072
Query 1438 ACAGGTTTCTTTGGTGCATTTTTACTAGCGTGCTACGATGTCGACAAGGAAGAATTCCAG 1497
|||||| ||| ||||||||||||||| || ||||| ||||| || |||||||| ||||||
Sbjct 2073 ACAGGTGTCTATGGTGCATTTTTACTCGCTTGCTATGATGTTGATAAGGAAGAGTTCCAG 2132
Query 1498 AGCATTTGTAAAATTGGTACTGGATTTTCTGACGCGGA-GCTTCAAGAGCTGTCTTCCAG 1556
|||||||||||||||||||||||||||||||| || | |||| | |||| ||| |||||
Sbjct 2133 AGCATTTGTAAAATTGGTACTGGATTTTCTGATGCC-ATGCTTGACGAGCGGTCGTCCAG 2191
Query 1557 TCTTTTCTCTAAAGTGATTGCTA-TACCAAAACAATACTACCAAGTCG-ATGACGGTCTC 1614
|||| |||| |||||||||||| | |||||||||||||||| ||| | | ||| | |||
Sbjct 2192 TCTTCGCTCTCAAGTGATTGCTACT-CCAAAACAATACTACCGAGTTGGA-GACAGCCTC 2249
Query 1615 AATCCAGATGTCTGGTTGGAGCCCACCGAGGTGTGGGAAGTGAAAGCAGCTGACTTGACA 1674
||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 2250 AATCCAGATGTTTGGTTTGAGCCCACTGAGGTCTGGGAAGTGAAAGCAGCTGACTTAACA 2309
Query 1675 ATTAGCCCTGTACATCGTGCAGCTA-TCGGAATTGTGGACCCTGATAAGGGAATTTCTCT 1733
||||||||||| || |||||||||| | || || ||||| ||||||||||| ||||||||
Sbjct 2310 ATTAGCCCTGTGCACCGTGCAGCTACT-GGCATAGTGGATCCTGATAAGGGGATTTCTCT 2368
Query 1734 ACGTTTTCCTCGTTTAGTCCGTGTGCGGAAAGACAAGAATCCAGAGGAAGCAACATCATC 1793
|||||||||||| || | ||||| ||| |||||||||| || |||||||||||||||||
Sbjct 2369 TCGTTTTCCTCGTCTACTTCGTGTACGGGAAGACAAGAAGCCCGAGGAAGCAACATCATC 2428
Query 1794 TGACCAGATTGCTGAAATGTATCAAGCTCAGAAAAACACAATCAACCAAGCAATCAAGGC 1853
||| ||||||||||| |||| |||||||||||| |||||||| ||||| ||| ||| |
Sbjct 2429 TGAGCAGATTGCTGATTTGTACCAAGCTCAGAAA--CACAATCATCCAAGTAATGAAGTC 2486
Query 1854 AAAGGTGACGACGGTTGAACAA 1875
||||||||||| | ||||||||
Sbjct 2487 AAAGGTGACGATGATTGAACAA 2508
Score = 401 bits (217), Expect = 1e-110
Identities = 372/444 (84%), Gaps = 21/444 (5%)
Strand=Plus/Plus
Query 171 CGAACTGAAGAGCAAAATTGGATTGCTGAAGAAGAAGCC-AGCTGATTTCGACCC-GAGC 228
|||| |||||||||||||||||||||||||||||||||| | ||||||||| || ||
Sbjct 566 CGAAATGAAGAGCAAAATTGGATTGCTGAAGAAGAAGCCGAA-TGATTTCGATCCTGAAA 624
Query 229 AAAGTGTCTTGTTGGGACAAAGGGGAGAGAGTTCCGTTTATGTTTCTGTC-C-TTGGCTT 286
||| ||||||| ||||| ||||||||||||||||||||| ||||| ||| | |||||||
Sbjct 625 AAA-TGTCTTGCTGGGAGAAAGGGGAGAGAGTTCCGTTTCTGTTT--GTCGCATTGGCTT 681
Query 287 TTGATCTGAT-TGCACTTGAAAGTGGCCGGATTGTCATCACTGATATTCTATGTAACATG 345
|||||||||| | || |||||||||||||||||| || ||||||||||| |||||||||
Sbjct 682 TTGATCTGATCT-CAAATGAAAGTGGCCGGATTGTGATTACTGATATTCTGTGTAACATG 740
Query 346 TTGAGAACCGCCATCGCCACTACTCAGGATGATTTGCTTTCTACGGTTTATCTTGCGGCC 405
|||||||| | || |||||||||| || |||||| | |||| ||||||||| ||||
Sbjct 741 TTGAGAACTGTTATTGCCACTACTCCTGAGGATTTGGTCGCTACTGTTTATCTTTCGGCG 800
Query 406 AATGAGATTGCACCTGCTCATGAAGGTGTCA-AATTGGGAATTGGTAAGGGTTCCTCCAT 464
||||||||||| || |||||||||||||| | |||||||||||||| || || | ||
Sbjct 801 AATGAGATTGCCCCGGCTCATGAAGGTGT-AGAATTGGGAATTGGTGAGAGTACA---AT 856
Query 465 TATTAAGGCAATCTCAGAAGCTTTTGGGAGAACTAAGGCTCAGGTTAAGCAA-CA-ATAT 522
||| ||||| ||||| || |||||||| |||||| ||| ||| |||||| || || | ||
Sbjct 857 TATCAAGGCTATCTCTGAGGCTTTTGGTAGAACTGAGGATCATGTTAAG-AAGCAGA-AT 914
Query 523 ACACAATTGGGAGACTTAGGG-CTTGTAGCAAAAGGAAGCCGTTCCTCTCAGACTGTGAT 581
|| || |||||||||| ||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 915 ACGGAACTGGGAGACTT-GGGACTTGTAGCAAAAGGAAGCCGTTCGACTCAGACTATGAT 973
Query 582 CTTCATGCACAAACCATTAACTGT 605
|||| || | ||||||| |||||
Sbjct 974 GTTCAAGCCCGAACCATTGACTGT 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92971409340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5