BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337067
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02890.1 | Symbols: | AAA-type ATPase family protein | chr1... 414 1e-114
> AT1G02890.1 | Symbols: | AAA-type ATPase family protein | chr1:645092-651907
REVERSE LENGTH=4131
Length=4131
Score = 414 bits (224), Expect = 1e-114
Identities = 435/532 (82%), Gaps = 33/532 (6%)
Strand=Plus/Plus
Query 838 TCAACCACAACCTCTAAAAGTTACACCTTTAAAACAGGTGATCGAGT--GG-AGTTCGTC 894
||||| |||||||||||||||||||||| ||| ||||||||||||| || || | |
Sbjct 1857 TCAACTGCAACCTCTAAAAGTTACACCTTCAAAGCAGGTGATCGAGTAAGGTTTTTAGGC 1916
Query 895 TTTTC-ACGTACTGCAT-TTGCTTCTTTCCGTCTTGCAAAACTTAGGTGG-CCGACTTTA 951
||| || | || | | |||||||| |||| || || |||| || ||| | |
Sbjct 1917 CCTTCAAC-TTCTTC-TCTTGCTTCTCTCCG---AGCTCCACCTAGG-GGACCGGCAACA 1970
Query 952 GG-TTTCAAGGGAAAAGTAATCCTTGCATTTGAAGACAATGAATCTTCAAAACTCGGGGT 1010
|| |||||| ||||||||| ||||||| ||||||| ||||| |||||||||| |||||||
Sbjct 1971 GGTTTTCAA-GGAAAAGTACTCCTTGCGTTTGAAGGCAATGGATCTTCAAAAATCGGGGT 2029
Query 1011 TAGATTTGATAGGCCGATAGCTGATGGCAATGA-CTTAGGTGGTCTATGTGAAAAAGACC 1069
|||||||||||| ||||| | ||||||||||| ||| ||||||||||| ||| ||||||
Sbjct 2030 TAGATTTGATAGATCGATACCAGATGGCAATGATCTT-GGTGGTCTATGCGAAGAAGACC 2088
Query 1070 ATGGTTTCTTTTGTGCAGCGAGTTCACTTCGCTTAGATAGTTCTTCCAATGACAGTTCTT 1129
||||||| |||||| | ||||||| | | ||| | | || | || |||||||
Sbjct 2089 ATGGTTTTTTTTGTACTGCGAGTT--C-T--CTTCG---G---TT---A-GAAAGTTCTT 2133
Query 1130 CCAATGACGATGCAGATAAACTTGCCATTAATGAAATCTTTGAGGT-GGTTTCTAATGAA 1188
||| ||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 2134 CCAGTGACGATGCTGATAAACTTGCCATTAATGAAATCTTTGAGGTAGCTTT-TAATGAA 2192
Query 1189 AGTGAAACAAGTTCATTGATATTGATGCTGAAAGACATTGGGAAATCTGAATCGGGGAAC 1248
||||||| | | |||||||||||| | || |||||||||| |||||||| |||||||||
Sbjct 2193 AGTGAAAGAGGGTCATTGATATTGTTCCTCAAAGACATTGAGAAATCTGTGTCGGGGAAC 2252
Query 1249 ACTGAACTGTATTTTACTTTGAAGAGCAAGCTTGAGAATTTACCGGAGAATACTGTTGTC 1308
||||| ||||| | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2253 ACTGATGTGTATATAACTTTGAAGAGCAAGCTTGAGAATTTACCGGAGAATATTGTTGTC 2312
Query 1309 ATAGCCTCACAAACCCAATTAGACAGCCCAGAGGAGAAATCCCAACCTGGAG 1360
||||| || |||||||| || |||| || | |||| |||||||| |||||||
Sbjct 2313 ATAGCTTCGCAAACCCAGTTGGACAACCGAAAGGAAAAATCCCACCCTGGAG 2364
Score = 355 bits (192), Expect = 8e-97
Identities = 306/362 (85%), Gaps = 4/362 (1%)
Strand=Plus/Plus
Query 455 CTAGACGCCAAGCACATACGGATTCTTTGCGAGCAAGCGTACTCAATCCTCAGGACATAG 514
||||||| ||||| |||| |||| | |||||| | | |||||||||||||||||||||
Sbjct 1354 CTAGACGTCAAGCGCATAAGGATAGTCTGCGAGGAGGAATACTCAATCCTCAGGACATAG 1413
Query 515 AATTTTCTTTTGAGAACTTCCCATATTTCTTAAGTGACACAACTAAGGATGATTTGATAA 574
|| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 1414 AAGTTTCTTTTGAGAACTTCCCATATTTCTTAAGTGGCACAACTAAGGATGTTTTGATGA 1473
Query 575 CATCAACATTTGCCCGTCTGAAGTTTGG--AGGCAAGTTTGCAAATTATGGACCAAAGCT 632
||| |||| ||||| | | |||| ||| ||| || | |||| | |||| | || | |
Sbjct 1474 TATCCACATATGCCCATATAAAGTATGGAAAGG-AA-TATGCAGAGTATGCATCAGATTT 1531
Query 633 GTCGACAATATGTCCCCGTATCCTGCTCTCTGGACCAGCTGGCTCTGAGATATATCGGGA 692
| | ||| |||||||||||| | |||||||||||| |||||||||||||||||| |||
Sbjct 1532 GCCAACAGCGTGTCCCCGTATCTTACTCTCTGGACCATCTGGCTCTGAGATATATCAGGA 1591
Query 693 AGTCTTAGCAAAAGCGCTTGCGAAACATTATGGGGCCAAATTGATGATTGTTGACACACT 752
| | ||||||||||||||||||||||| | ||||||||||||||||||||||||| | ||
Sbjct 1592 AATGTTAGCAAAAGCGCTTGCGAAACAATGTGGGGCCAAATTGATGATTGTTGACTCTCT 1651
Query 753 CTTATTACCTGGGGGATCAACATCCAAGGAAGCAGATTCGACCAAAGAAAGTGATAGCCG 812
||| ||||||||||| |||||| |||||||||||||| | |||||||||||| ||| ||
Sbjct 1652 CTTGTTACCTGGGGGTTCAACACCCAAGGAAGCAGATACTACCAAAGAAAGTTCTAGGCG 1711
Query 813 TG 814
||
Sbjct 1712 TG 1713
Score = 204 bits (110), Expect = 3e-51
Identities = 279/357 (78%), Gaps = 26/357 (7%)
Strand=Plus/Plus
Query 86 CTAAGTTTCCTTGGGCTAAGCTTATTTCTCAGTATCCAGAGAGA-CCTCAT-TGTGTCAT 143
||||| ||||||||| |||||| ||||||||| ||| ||| | |||||| | ||||||
Sbjct 469 CTAAGGCTCCTTGGGCCAAGCTTCTTTCTCAGTTTCCTCAGA-ACCCTCATCT-TGTCAT 526
Query 144 CACAAGCGCTGTGTTTACTGTTGGA-AGCCATGAATGCGATTTACT-TATCCCAGATCTA 201
| | || ||||||||||||||||| || | | ||||||||| | |||| ||||| |
Sbjct 527 GAGAGGCTCTGTGTTTACTGTTGGACGGCGA-GCCTGCGATTTA-TGTATCAGAGATC-A 583
Query 202 TTCATCATCCCCGGCGTTCTGTGTGAACTGACGCTGATGAAGCACCGAG-ACGGAGGTCC 260
||| | || ||| ||||| |||||||| | | | || | ||| ||||||||||
Sbjct 584 TTC-T-ATGCCCAATGTTCTATGTGAACT-A-----AGGCAG-TCTGAGCACGGAGGTCC 634
Query 261 TTCAGTTCCCA-CCCTTCAGATAAAAGGGAGTGGAGTTGGTCCTGTTGTGGTCAATCGCA 319
|||||| || | || |||||| ||||| ||||| | | |||| ||||||| |||
Sbjct 635 ATCAGTT-GCATCGCTGGAGATAATAGGGAATGGAG-T--ACTTGTTCAGGTCAATGGCA 690
Query 320 AGCCTTACCTAAAGGA-TACTTGTGTTGATCTGCAGGGTGGCGATGAGGTTGTCTTCAGC 378
|| ||||| |||||| |||||||||| |||| | |||||||||||| || |||||| |
Sbjct 691 AGATTTACC-AAAGGAGTACTTGTGTTCATCTACGGGGTGGCGATGAAATTATCTTCACC 749
Query 379 ACCCCTTGGAAACATGCTTATATATTTCAGCCTCTGAAATATGAAAATCTTTCTGCT 435
|||||| |||||||||||||||||||||||||||| ||| |||||||||| |||||
Sbjct 750 ACCCCTGGGAAACATGCTTATATATTTCAGCCTCTTAAAGATGAAAATCTAGCTGCT 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91766596260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5