BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg337082

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71080.1 | Symbols:  | RNA polymerase II transcription elong...   409    1e-113


> AT1G71080.1 | Symbols:  | RNA polymerase II transcription elongation 
factor | chr1:26809841-26811842 REVERSE LENGTH=1324
Length=1324

 Score =  409 bits (221),  Expect = 1e-113
 Identities = 269/291 (92%), Gaps = 8/291 (3%)
 Strand=Plus/Plus

Query  141  GGTGACATTTGAAGGTAGTAGCGAGGATTACAAAGAACA-CGATGCGGTGTTGTTTTTCG  199
            ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct  425  GGTGACATTTGAAGGTAGTAGTGAGGATTACAAAGAA-AGCGATGCGGTGTTGTTTTTCG  483

Query  200  ATGGGGAGAAGTTTCGTTTGGAGAGGTTGCATCGAGCTGTGAAGCAGCTGCGACATCTTA  259
            ||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||| |||
Sbjct  484  ATGGGGAGAAGTTTCGTTTAGAGAGGTTGCATCGGGCTGTTACGCAGCTGCGACATGTTA  543

Query  260  GGACACCAGGTGAATCTGCTGCGGCTTCTTCTCAGGCTGCGATGCCTGTGGAGCATAATC  319
            ||||||| ||||||||||||||||   |||||||  ||||| ||||||||||||   |||
Sbjct  544  GGACACCTGGTGAATCTGCTGCGG---CTTCTCAATCTGCGGTGCCTGTGGAGC---ATC  597

Query  320  GATTATCTCCTGTTGATCGTGCTGCTAAATCTCCACAAGTGAATAGAAGTTTGCTTCCAG  379
            | ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct  598  GGTTATCTCCTGTTGGTCGTGCTGCTAAATCTCCACAAGTCAATAGAAGTTTGCTTCCTG  657

Query  380  ATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAG  430
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  658  ATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAG  708



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5