BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337083
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03930.1 | Symbols: | Plant invertase/pectin methylesterase... 715 0.0
AT1G36700.1 | Symbols: | pseudogene, hypothetical protein | ch... 575 2e-163
AT3G27980.1 | Symbols: | Plant invertase/pectin methylesterase... 315 5e-85
> AT4G03930.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr4:1870422-1872387 FORWARD LENGTH=1575
Length=1575
Score = 715 bits (387), Expect = 0.0
Identities = 528/594 (89%), Gaps = 18/594 (3%)
Strand=Plus/Plus
Query 106 ATAACAACGGT-G--ATCGGAGTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAA 159
||||||| ||| | || || ||| |||||| ||| ||| |||||||| |||||||||
Sbjct 37 ATAACAATGGTGGTTATTGGTGTTAGCAAAGAATATTGTGATGACAAACACTCATGTCAA 96
Query 160 AATC-TTTTGTTGGAGCTCAAGA-GGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTG 217
|| | ||||||||||||| |||| | | |||||||||||||||||||| | | ||||||
Sbjct 97 AA-CTTTTTGTTGGAGCTTAAGACAGCT-TCCTCGTCACTCTCGGAGATTAGACGTCGTG 154
Query 218 AGTTATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTG 277
| ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct 155 ACTTATTGATCATCGTTTTGAAGAATTCCGTGCGGAAGATCGACATGGCTATGATTGGTG 214
Query 278 TGATGGAAGACACAAAACTACTTGAGCAGATGGAGAATGATATGCT-TGGTGTGAAGGAG 336
|||||||||| ||||||| || |||| ||||||||||||||| ||| | || ||||||||
Sbjct 215 TGATGGAAGATACAAAACAACATGAGGAGATGGAGAATGATAAGCTAT-GTTTGAAGGAG 273
Query 337 GACACAAATCTATTTGAAGAGATGATGGACTCGGCAAAAAATAGGATGATCCGTTCAGTG 396
||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 274 GACACAAATCTATTTGAGGAGATGATGGAGTCGGCAAAAGATAGGATGATCCGTTCAGTG 333
Query 397 GAGGAACTTTTAGGAGGAGAA-AGCCTTAATCTTGGTTCTTACGAAAACGTCCACACTTG 455
|||||||| |||||||||||| |||| ||||||| |||||||||||| ||||||||||
Sbjct 334 GAGGAACTCTTAGGAGGAGAATTCCCTT-ATCTTGGATCTTACGAAAACATCCACACTTG 392
Query 456 GCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGAAGGTGCCTA 515
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 393 GCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGACGGTGCCTA 452
Query 516 TAAACGTCGGGTCGAGCCAGAGCTTGAGGACCTCATTTCTAGGGCAAGAG-TAGCTTTGG 574
||||||||||||||||||| ||||| | ||||||||||||| ||||| || |||||||||
Sbjct 453 TAAACGTCGGGTCGAGCCACAGCTTCAAGACCTCATTTCTAAGGCAA-AGGTAGCTTTGG 511
Query 575 CAATTTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAAGTCGGTGGTTTCCAATG 634
| ||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||
Sbjct 512 CTCTTTTTATCTCCATTTCGCCGAGAGACAACACCGAACTTAACTCGGTGGTTCCCAATA 571
Query 635 GCCCGTCTTGGTTATC-CAAAGTTGACAAAAAATATCTATATCTCAATCCTGAG 687
|||||||||||||||| || |||||||| ||| |||||||||||||| |||||
Sbjct 572 GCCCGTCTTGGTTATCTCAT-GTTGACAAGAAAGATCTATATCTCAATGCTGAG 624
> AT1G36700.1 | Symbols: | pseudogene, hypothetical protein |
chr1:13877990-13878553 REVERSE LENGTH=564
Length=564
Score = 575 bits (311), Expect = 2e-163
Identities = 454/519 (87%), Gaps = 26/519 (5%)
Strand=Plus/Plus
Query 106 ATAACAACGGTGATCGGAGTTTGCAAAGGATA---TGA-CGACAAACAGTCATGTCAAAA 161
||||||| ||| || || ||| ||||| ||| ||| || ||||||||||||||||||
Sbjct 36 ATAACAATGGTTATTGGCGTTAGCAAAAAATATTGTGATCG-CAAACAGTCATGTCAAAA 94
Query 162 TC-TTTTGTTGGAGCTCAAGAGGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTGAGT 220
| ||||||||||||| |||| || |||||||||||||| |||||| | | ||||| |
Sbjct 95 -CTTTTTGTTGGAGCTTAAGACAGTTTCCTCGTCACTCTCAAAGATGAGACGCCGTGACT 153
Query 221 TATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTGTGA 280
|||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||
Sbjct 154 TATTGATCATCGTTTTGAAGAATTCCGTG-CGAGGATTGACATGGCTATGATTGGTGTGA 212
Query 281 TGGAAGACACAAAACTACTTGAGCAGATGGAGAATGATATGCTTGGTGTGAAGGAGGACA 340
||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 213 TGGAAGAGACAAAACAACTTGAGGAGATGGAGAATGATATGCTTGGTGTGAAGGAGGACA 272
Query 341 CAAATCTATTTGAAGAGATGATGGACTCGGCAAAAAATAGGATGATCCGTTCAGTGGAGG 400
||||||||||||||||||||||||| | ||||||| ||||||||||||||| |
Sbjct 273 CAAATCTATTTGAAGAGATGATGGAGTTGGCAAAAGATAGGATGATCCGTT---T----- 324
Query 401 AACTTTTAGGAGGAGAAAGCCTTAATCTTGGTTCTTACGAAAACGTCCACACTTGGCTCA 460
| |||||||||||||| ||||||||| |||||||||||||||||||||| ||| |
Sbjct 325 ---T---AGGAGGAGAAAGCCCTAATCTTGGATCTTACGAAAACGTCCACACTTAGCTTA 378
Query 461 GTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGAAGGTGCCTATAAAC 520
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 379 GTGGCGTTCTTACTAGCTACATCACATGTATCAACGAAATTGGTGAAGGTGCCTATAAAC 438
Query 521 G-TCGGGTCGAGCCAGAGCTTGAGGACCTCATTTCTAGGGCAAGAGTAGCTTTGG-CAAT 578
| | ||||||||||| | ||||||||||||||||||||||||||||||||||||| | |
Sbjct 439 GAT-GGGTCGAGCCATACCTTGAGGACCTCATTTCTAGGGCAAGAGTAGCTTTGGTCC-T 496
Query 579 TTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAA 617
|||||| |||||||| ||||||||| ||||| |||||||
Sbjct 497 TTTTATCTCCATTTCCCCGAGAGACAACACCAAACTTAA 535
> AT3G27980.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:10393904-10395861 FORWARD LENGTH=1494
Length=1494
Score = 315 bits (170), Expect = 5e-85
Identities = 238/270 (88%), Gaps = 7/270 (3%)
Strand=Plus/Plus
Query 106 ATAACAACGGTGATCGGAGTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAAAAT 162
|||| || ||| || || ||| |||||| ||| ||| ||||||||||||||||||||
Sbjct 37 ATAATAATGGTAATTGGCGTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAAC 96
Query 163 CTTTTGTTGGAGCTCAA-GAGGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTGAGTT 221
|||||||||||||| || | |||| || ||||||||||||||||| | | ||||||| ||
Sbjct 97 CTTTTGTTGGAGCTTAAGGCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTT 155
Query 222 ATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTGTGAT 281
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 156 ATTGATCATCGTTTTGAAGAATTCCGTACGGAGGATCGACATGGCTATGATTGGTGTGAT 215
Query 282 GGAAGACACAAAACTACTTG-AGCAGATGGAGAATGATATGCTTGGTGTGAAGGAGGACA 340
||| || ||||||| || || || ||||||||||||||||||||||||||||||||||||
Sbjct 216 GGATGATACAAAACAACATGAAG-AGATGGAGAATGATATGCTTGGTGTGAAGGAGGACA 274
Query 341 CAAATCTATTTGAAGAGATGATGGACTCGG 370
||||||||||||| ||||||||||| ||||
Sbjct 275 CAAATCTATTTGAGGAGATGATGGAGTCGG 304
Score = 311 bits (168), Expect = 6e-84
Identities = 219/244 (90%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 447 CCACACTTGGCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGA 506
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 315 CCACACTTGGCTTAGTAGCGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGA 374
Query 507 AGGTGCCTATAAACGTCGGGTCGAGCCAGAGCTTGAGGACCTCATTTCTAGGGCAAGAGT 566
||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 375 AGGTGCCTATAAACGCCGGGTCGAGCCAAAGCTTGAAAACCTCATTTCTAGGGCAAGAGT 434
Query 567 AGCTTTGGCAATTTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAAGTCGGTGGT 626
|| |||||| ||||||| |||||||| | ||||||| |||||||||||| |||||| |
Sbjct 435 AGTTTTGGCTCTTTTTATCTCCATTTCACTGAGAGACAACACCGAACTTATCTCGGTGAT 494
Query 627 TTCCAATGGCCCGTCTTGGTTAT-CCAAAGTTGACAAAAAATATCTATATCTCAATCCTG 685
| |||||||||| |||||||||| ||| |||||||| ||| |||||||||||||| |||
Sbjct 495 TCCCAATGGCCCTTCTTGGTTATTCCAT-GTTGACAAGAAAGATCTATATCTCAATGCTG 553
Query 686 AGAT 689
||||
Sbjct 554 AGAT 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5