BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg337098

Length=1239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25080.1 | Symbols:  | Protein of unknown function (DUF626) ...  71.3    2e-11


> AT3G25080.1 | Symbols:  | Protein of unknown function (DUF626) 
| chr3:9136631-9138052 FORWARD LENGTH=976
Length=976

 Score = 71.3 bits (38),  Expect = 2e-11
 Identities = 143/191 (75%), Gaps = 17/191 (9%)
 Strand=Plus/Plus

Query  464  GCTTGCCTGAGTGGCCGCCAGAGAATCCTTTCAAAGATACGAAGCGGTTTTATGTGGTGA  523
            ||||||| ||||| |||||||||||||||||  || ||    |    | |||| || |||
Sbjct  452  GCTTGCCGGAGTGTCCGCCAGAGAATCCTTTTGAA-AT----A----TATTATCTGATGA  502

Query  524  AGAAGTCAGAGCTGCAAGACAATGTCAATGACTGGATTCGTCTTTATTTGGAACTTGCGG  583
            || | || ||||| ||||| ||  | ||||||||||||||||| |||||||||||||| |
Sbjct  503  AGGATTCGGAGCTCCAAGA-AA-AT-AATGACTGGATTCGTCTATATTTGGAACTTGCTG  559

Query  584  TT---TCTTC-GAAACGTAACATGTTTTTTAAAGATGAAGATCTCTCCAACTTGGAGATT  639
            ||    |  | || | | |||| |     ||  |||   | |||||||||||||||||||
Sbjct  560  TTGCCACCACTGATA-GGAACAGGGAAGCTAGTGATTTTGGTCTCTCCAACTTGGAGATT  618

Query  640  GTCAACGTGGC  650
            |||||||||||
Sbjct  619  GTCAACGTGGC  629



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60893261085


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5