BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337099
Length=3492
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10320.1 | Symbols: | tRNA synthetase class I (I, L, M and ... 664 0.0
AT1G67370.1 | Symbols: ASY1, ATASY1 | DNA-binding HORMA family ... 534 2e-150
> AT4G10320.1 | Symbols: | tRNA synthetase class I (I, L, M and
V) family protein | chr4:6397330-6404596 REVERSE LENGTH=3856
Length=3856
Score = 664 bits (359), Expect = 0.0
Identities = 535/617 (87%), Gaps = 23/617 (4%)
Strand=Plus/Plus
Query 2669 GTCTTGTAGAAGACGTTTATGATTGTTGGTTTGAGAGTGGGTCAATGCCTTATGCGCACA 2728
||| ||||||||| |||| ||||||||||||||||||||||||||||||||| ||| | |
Sbjct 1736 GTCGTGTAGAAGATGTTTTTGATTGTTGGTTTGAGAGTGGGTCAATGCCTTACGCGTATA 1795
Query 2729 TCCATTATCCTTTTGAAAACAAGGAGCTTATT-GAGAAAAA-TTTCCCTGGTCATTTTGT 2786
|||||||||| ||||||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct 1796 TCCATTATCCGTTTGAAAACAAGGAG-TTATTTGAGAAGAACTTTCC-TGGTGATTTTGT 1853
Query 2787 AGCTGAAGGGCTTGATCAAACTCGAGGATGGTTTTATACTCTTATGGTGTTGTCAACTGC 2846
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1854 GGCTGAAGGTCTTGATCAGACTCGTGGATGGTTTTATACTCTTATGGTGTTGTCTACTGC 1913
Query 2847 ATTACATCGAAAATC-AGTGGTTCGAAATGTGATTTGCAATGGTCTTGTGCTTGCTGAGG 2905
|||| | ||||| | || | || |||| ||||||||||||||||||| ||||||||||
Sbjct 1914 ATTATTT-GAAAAACCAGCGTTTAAAAATCTGATTTGCAATGGTCTTGTACTTGCTGAGG 1972
Query 2906 ATGGAGAAAA-GATAAG-TAAGAAATTACAGAATTATCCACCACCTTTGGATCTCATAGA 2963
|||| ||||| ||| | ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1973 ATGG-GAAAAAGATG-GCTAAGAAATTACGGAATTATCCACCACCTTTGGAAGTCATAGA 2030
Query 2964 TGAGTATGGAGCTGATGCTCTGTGGTTGTACCTGATAAATTCTCTGGTTGTTCACGCTGA 3023
||||||||| ||||||||| || | ||||||||||||||||||| |||||| | |||||
Sbjct 2031 TGAGTATGGGGCTGATGCTGTGCGATTGTACCTGATAAATTCTCCGGTTGTACGTGCTGA 2090
Query 3024 GCCACTACGCTTCAAAAAAG--G-AGTACTTGGTGTTGTCAAAGATGTGTTGCTTCCATT 3080
|||||||||||||||||||| | |||||| ||||||||||||||||| || |||||||
Sbjct 2091 GCCACTACGCTTCAAAAAAGAAGGAGTACTCGGTGTTGTCAAAGATGTATTCCTTCCAT- 2149
Query 3081 TACATGGTACAATGCAGATGGGTTCCTTGTTCAGAATGCAAGGAGACTTGAGATTGAAAG 3140
||||||||||| || ||||||| ||||||||||||| ||||||||||| |||| |
Sbjct 2150 -----GGTACAATGCATATCGGTTCCTCGTTCAGAATGCAAAGAGACTTGAGACTGAAGG 2204
Query 3141 TTGTGGGCCCTTTGTTGCTAGTGATCTGG-AAGCTTTACAATCATCAAACGTTCTCGATC 3199
| ||| |||||||||| ||| |||||||| || || |||| ||| ||||| |||| ||||
Sbjct 2205 TGGTGTGCCCTTTGTTCCTACTGATCTGGCAA-CTATACAGTCAGCAAACATTCTTGATC 2263
Query 3200 AGTGGATTCAGTCAGCTACGCAGAGTCTTGTCCATTTCT-TCCGCCAGGAGATGGATGGA 3258
|||||||||| |||||||||||||||||||| | ||| | ||||| ||||||||||||
Sbjct 2264 AGTGGATTCACTCAGCTACGCAGAGTCTTGTTCGTTT-TGTCCGCGAGGAGATGGATGCC 2322
Query 3259 TATCGGCTTTACACTGT 3275
|||||||||||||||||
Sbjct 2323 TATCGGCTTTACACTGT 2339
> AT1G67370.1 | Symbols: ASY1, ATASY1 | DNA-binding HORMA family
protein | chr1:25239117-25243837 REVERSE LENGTH=2145
Length=2145
Score = 534 bits (289), Expect = 2e-150
Identities = 532/642 (83%), Gaps = 45/642 (7%)
Strand=Plus/Plus
Query 216 TGCTTTAGATATGAAGATCAAGACGCTAA-GGCAAGTCGACACTGAACCACGGCGATTAA 274
|||||||||||||||||| |||| ||||| | | | | ||| ||||| | || |||||||
Sbjct 274 TGCTTTAGATATGAAGATTAAGAAGCTAATGCCTA-TGGACGCTGAATCTCGCCGATTAA 332
Query 275 TTGACTGGAATTGGATGGAGAAAGGAGTCAACGATGCGCTGCAGAGGAAATATTTGAAGA 334
| | | |||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 333 -T---T-G-ATTGGATGGAGAAAGGAGTCTACGATGCGCTTCAGAGGAAATATTTGAAGA 386
Query 335 CGCTTGTCTTCTGC--AT-T----C-G-TGATGGTCCGATGATTGAGGAATACTCATTTT 385
|||| | ||| || || | | | ||||||||||||||||||||||||||||||||
Sbjct 387 CGCTCATGTTCAGCATATGTGAAACTGTTGATGGTCCGATGATTGAGGAATACTCATTTT 446
Query 386 CTTTCAGCTATTCAGATTCTGGCAGCCAACATGTCACT-ATGAATGTCAATCGTAATGGA 444
||||||||||||||||||||| ||||||| |||||| | |||||| ||||||||| ||||
Sbjct 447 CTTTCAGCTATTCAGATTCTGACAGCCAAGATGTCA-TGATGAATATCAATCGTACTGGA 505
Query 445 AATAAGAAACATGAAGGAA-------C-CC-C--C--A-AT--C---AAAT-----GAGT 480
||||||||| ||| ||||| | || | | | || | |||| |||
Sbjct 506 AATAAGAAAAATGGAGGAATATTTAACTCCACTGCTGACATTACCCCAAATCAAATGAGG 565
Query 481 ACTTCAGCTTGCAAAATGGTCCCTACACTAGTTCAGCTGTTGAGGACTCTTGACAAAACG 540
| |||||||||||||||||| | |||||||||||||||| |||||||||||||||||| |
Sbjct 566 AGTTCAGCTTGCAAAATGGTTCGTACACTAGTTCAGCTGATGAGGACTCTTGACAAAATG 625
Query 541 CCAGACAAGCGCACCATTGTGATGAAGCTTCTTTACTACGATGATGTGATGCCACCAGAT 600
||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||
Sbjct 626 CCAGATGAGCGCACCATAGTGATGAAGCTTCTGTACTACGATGATGTGACGCCACCAGAT 685
Query 601 TATGAGCCACCTTTCTTCAGAAGCTGCACAGAAGAAGAATCTAATTATGTATGGACAAAG 660
|| |||||||||||||||||| |||| |||||||| ||| || | |||||||||||||||
Sbjct 686 TACGAGCCACCTTTCTTCAGAGGCTGTACAGAAGACGAAGCTCAGTATGTATGGACAAAG 745
Query 661 GATCCTATGATAATGGAAGTTGGGATTATTTATAGGAAACATCTCGTGTTAGCTTTAACG 720
||||| ||| ||||||| |||||| | || | || ||||||||||||||| | ||| |
Sbjct 746 AATCCTCTGAGAATGGAAATTGGGAATGTTAACAGCAAACATCTCGTGTTAACGCTAAAG 805
Query 721 GTCAAGAGCTTGCTTGATCCCTCTGAGGATGAAAATGATGACATGCAAGA-GCATGGGAA 779
||||||||| |||||||||| | ||| ||||||||||| ||||||||||| | |||| ||
Sbjct 806 GTCAAGAGCGTGCTTGATCCTTGTGAAGATGAAAATGACGACATGCAAGATG-ATGGTAA 864
Query 780 GAGCACAAAACCTGATTGTGTACATGACAACCAGCCTTCTGA 821
||| | | |||||||| ||||||||| |||||||||||||
Sbjct 865 GAGTATAGGACCTGATTCTGTACATGATGACCAGCCTTCTGA 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 173828457495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5