BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg337121

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49700.1 | Symbols:  | Plant protein 1589 of unknown functio...   401    3e-111


> AT1G49700.1 | Symbols:  | Plant protein 1589 of unknown function 
| chr1:18388792-18390496 REVERSE LENGTH=840
Length=840

 Score =  401 bits (217),  Expect = 3e-111
 Identities = 419/513 (82%), Gaps = 28/513 (5%)
 Strand=Plus/Plus

Query  1    ATGACTTATCTCTATAATCATGACAAGATTCTTCATCATATCACTGCAACAATTTGGGAA  60
            ||||||||| | ||| |||||||| | |||| | | ||||||||||||||||||||||||
Sbjct  97   ATGACTTATATGTATGATCATGACCATATTCCTAAACATATCACTGCAACAATTTGGGAA  156

Query  61   CATCTTCAAAGAGAGAGCCCAAATTTCTTCGACGAATACAACAAAAGATGCGAGTTGGCT  120
            |||||||||||||||| ||||||||||||  | |||||||||||| ||||||| |||| |
Sbjct  157  CATCTTCAAAGAGAGAACCCAAATTTCTTTAAAGAATACAACAAACGATGCGAATTGGTT  216

Query  121  CGTCAAATAGCTAAATTCAATGATTTGCTAGCTCAGCAAA-A-AT---AT-CTAA---TT  171
            |||||||||| || | |||| || ||||| |||||||||| | ||   || | ||   ||
Sbjct  217  CGTCAAATAGTTACACTCAACGACTTGCTTGCTCAGCAAATAGATCTGATGCAAAGACTT  276

Query  172  -G--ATCTT-A-GC----ACTTCAGCACCAGTAACAAAGTTGCAAAAACTTAATGATCAT  222
             |  | ||| | |     ||| | ||||||||||||||||||||| ||| ||||||||||
Sbjct  277  AGCCAACTTGATGTTGGTACTACTGCACCAGTAACAAAGTTGCAAGAACCTAATGATCAT  336

Query  223  CATGATGATCAAGAT--AAAGTTCATGATCAATGGTTTGTGTCTGATGATTTTGCTGATA  280
            ||| ||||| ||| |  ||| | | ||| || ||||| | | || ||| ||||||| |||
Sbjct  337  CATCATGATGAAG-TCCAAACT-CTTGAACAGTGGTTGGAGACTAATGGTTTTGCTAATA  394

Query  281  TAGAAGATGCATTCCCTTCTTTAATCGATCCGGTTGCTGCATCGGTAACAAAGTTGCAGA  340
            |||||||| |||||| || ||||| ||||| ||||| |||| | |||||| || ||||||
Sbjct  395  TAGAAGATACATTCCTTTGTTTAAGCGATCTGGTTGATGCACCAGTAACAGAGGTGCAGA  454

Query  341  AGCCTAATGATCAAGATCAAATTTGTGATCAGTGGATTAATGGAACTAATGATTTGGCTT  400
            | ||||| ||| ||||||||| |||||||||||||||||||||  |||||||||| ||||
Sbjct  455  AACCTAAGGATAAAGATCAAAGTTGTGATCAGTGGATTAATGGGTCTAATGATTTAGCTT  514

Query  401  CTATAGGAGAAATAGTTTCTTCTCTCATCGATCCGTCACCGTTGGCTGAAACACCACAAT  460
            |||||| ||||| |||||||||| | ||| |||| ||||| || ||||||||||||||||
Sbjct  515  CTATAGAAGAAACAGTTTCTTCTTTGATCAATCCATCACCATTTGCTGAAACACCACAAT  574

Query  461  CAGATCCTCCTACAACTGGTCTACGATACGATA  493
            |||| ||||||      ||||||||||||||||
Sbjct  575  CAGAACCTCCT------GGTCTACGATACGATA  601



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29487444289


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5