BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337131
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49770.1 | Symbols: RGE1, ZOU | basic helix-loop-helix (bHLH... 832 0.0
> AT1G49770.1 | Symbols: RGE1, ZOU | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:18424578-18426782
FORWARD LENGTH=1178
Length=1178
Score = 832 bits (450), Expect = 0.0
Identities = 519/553 (94%), Gaps = 2/553 (0%)
Strand=Plus/Plus
Query 1 ATGACTAATGCTCAAGAGTTGGGGCAAGAGGGTTTTATGTGGGGCATATCCAATTCTGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTAATGCTCAAGAGTTGGGGCAAGAGGGTTTTATGTGGGGCATATCCAATTCTGAT 60
Query 61 GATTCCGGAGGTGGTTGCAGAGGAATCGAGAAACAATCGCCTCCATCGCAACCTTCTCAT 120
||||||||||||||||||| | ||||||||||| || ||| |||||| || || ||||||
Sbjct 61 GATTCCGGAGGTGGTTGCAAAAGAATCGAGAAAGAACCGCTTCCATCACATCCGTCTCAT 120
Query 121 CCGTCGCCAAAGATCCAGACTGCGACGGTgaaaaaggggaaaaaa-aggacgaaaagaaa 179
||||||||| ||||||||||| ||||||| ||||| ||||||||| || |||||||||||
Sbjct 121 CCGTCGCCAGAGATCCAGACTACGACGGTTAAAAA-GGGAAAAAAGAGAACGAAAAGAAA 179
Query 180 tgataaaaaCCATGAAGAAGAATCACCTGATCATGAAATACATATATGGACCGAAAGAGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGATAAAAACCATGAAGAAGAATCACCTGATCATGAAATACATATATGGACCGAAAGAGA 239
Query 240 AAGGAGaaaaaaaaTGAGGGACATGTTTTCTAAATTACATGCTTTGCTTCCTCAACTTCC 299
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 AAGGAGAAAGAAGATGAGGGACATGTTTTCTAAATTACATGCTTTGCTTCCCCAACTTCC 299
Query 300 CCCTAAGGCAGACAAATCAACGATAGTAGATGAAGCAGTGAGTTCCATCAAATCCCTTGA 359
|||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 300 TCCTAAGGCAGACAAATCAACAATTGTAGATGAAGCAGTGAGTTCAATCAAATCCCTTGA 359
Query 360 ACAAACTTTGCAAAAACTCCAAATGCAAAAGCTCGAGAGGCTTCAGTATTCTTCTGCCTC 419
|||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct 360 ACAAACTTTGCAAAAACTTGAAATGCAAAAGCTTGAGAAGCTTCAGTATTCTTCTGCCTC 419
Query 420 AACAAACACAACTCCTACTACAACTTTGGCTTATGATCCATCTTCTTCTTCTTCTCCAAC 479
||||||||||||||||||||||||||| ||||||| |||||| || || |||||||||||
Sbjct 420 AACAAACACAACTCCTACTACAACTTTTGCTTATGCTCCATCATCATCCTCTTCTCCAAC 479
Query 480 AACTCTCCTCACACCAATCTCAAACCATCCCATAGGCGCCACCGCAGCAGATTCTTACCC 539
| |||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||
Sbjct 480 AGCTCTCCTCACACCAATATCAAACCATCCCATAGACGCCACCGCAACAGATTCTTACCC 539
Query 540 TCGCGCAGCTTTC 552
|||||||||||||
Sbjct 540 TCGCGCAGCTTTC 552
Score = 496 bits (268), Expect = 2e-139
Identities = 313/335 (93%), Gaps = 2/335 (1%)
Strand=Plus/Plus
Query 552 CCTGCCTTACCCTTGTAATGATCCGATCGTGACTTTCGATACTTGGTCCTCACGTAACGT 611
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 594 CCTGCCTTACCCTTGTAATGATCCGATCGTGAATTTCGATACTTGGTCCTCACGTAACGT 653
Query 612 CGTGCTGAATATCTGTGGAAATGAAGCATTCTTCAATTTGTGTGTCCCTAAACACAAATC 671
||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 654 GGTGCTGACTATCTGTGGGAATGAAGCTTTCTTCAATTTGTGTGTCCCTAAACACAAACC 713
Query 672 AGGGGTTTTCACTTCTGTTTGTTACTTGTTTGAGAAGTATAACATGGAGGTTTTGTTTGC 731
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 714 AGGGGTTTTCACTTCTGTTTGTTACTTGTTTGAGAAGTACAACATGGAGGTTTTGTTTGC 773
Query 732 TAATGTCTCCTCTAATGTTTTCCGGAGCACCTACGTGATCCAAGCACAGGTAAATCCGAG 791
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 774 TAATGTCTCCTCTAATGTTTTCTGGAGCACCTACGTGATCCAAGCACAGGTAAATCCGAG 833
Query 792 TTACGAGAGTCAGTTATTGGGAAATGGGT-TTGGAGTAGGGGACATTTTCAAGCAAGTTG 850
|| |||| ||||||| |||||||||| | ||||||| | ||| ||||||||||||||
Sbjct 834 TTGTGAGAATCAGTTACTGGGAAATGG-TCTTGGAGTTGTAGACGTTTTCAAGCAAGTTT 892
Query 851 CTCAAGAACTGGTGTTATACCTTTCATCTCCATAA 885
||||||||||||||||||| ||||||||| ||||
Sbjct 893 CTCAAGAACTGGTGTTATATTTTTCATCTCTATAA 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5