BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337140
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49810.1 | Symbols: ATNHD2, NHD2 | Na+/H+ antiporter 2 | chr... 2013 0.0
AT3G19490.1 | Symbols: ATNHD1, NHD1 | sodium:hydrogen antiporte... 959 0.0
> AT1G49810.1 | Symbols: ATNHD2, NHD2 | Na+/H+ antiporter 2 | chr1:18440013-18442237
REVERSE LENGTH=1263
Length=1263
Score = 2013 bits (1090), Expect = 0.0
Identities = 1207/1265 (95%), Gaps = 2/1265 (0%)
Strand=Plus/Plus
Query 1 ATGGCATTGTTGTTTGGAATAGGATATGTGTTCATCATCTTCGAGGAGTGTTTATCTTTT 60
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 1 ATGGCATTGTTGTTTGGAATAGGATATGTGTTGATCATCTTCGAGGAGTCTTTATCATTT 60
Query 61 AGTAAATGCGGAATAGCACTTTTGATGGCCGTCAGTTTGTGGGTTGTGCGAAGCATCGAG 120
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AGTAAAAGCGGAATAGCACTTTTGATGGCCGTTAGTTTGTGGGTTGTGCGAAGCATCGAG 120
Query 121 ACATCTCTAGAAATTGTTACTTTAGAGCTTCAACACGCAACAAGTGAAGTTAGTCAAATA 180
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ACTTCTGTAGAAATTGTTACTTTAGAGCTTCAACACGCAACAAGTGAAGTTAGCCAAATA 180
Query 181 GTGTTCTATATGCTTGGCGCGATGACTATTGTGGAGATAATTGATGTTCATCAAGGATTC 240
|||||||| ||||| || || ||||| |||||||| |||||||||| ||||||||||||
Sbjct 181 GTGTTCTACATGCTCGGAGCAATGACCATTGTGGAAATAATTGATGCTCATCAAGGATTT 240
Query 241 AAGCTGGTTACAGATTGTATAACATCTAGGAAACCGAAGATACTTTTATGGATGATTGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 AAGCTGGTTACAGATTGTATAACATCTAGGAAACCGAAGATACTTTTATGGGTGATTGGT 300
Query 301 TTTGCGACCTTTTTCCTCAGCTCGGTTCTTGACAATCTAACAACTACTGTTGTTATGGTT 360
|| |||||||||||||||||||| ||||||||||| |||||| ||||| |||| |||||
Sbjct 301 TTCGCGACCTTTTTCCTCAGCTCTGTTCTTGACAACCTAACATCTACTATTGTAATGGTG 360
Query 361 TCGCTACTGAGAAGACTAGTTCCTCCATCAGAATACCGCAAGCTTTTAGGAGCAGTTGTG 420
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TCGCTACTGAGAAGACTAATTCCTCCATCAGAATACCGCAAACTTTTAGGAGCAGTTGTG 420
Query 421 GTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATATTACTACAACTATG 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATGTTACTACAACTATG 480
Query 481 CTATGGATAAATGGCCATATATCAACATTTTCGACTATAAAGAACCtttttttACCTTCA 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTATGGATACATGGCCATATATCAACATTTTCGACTATAAAGAACCTTTTTTTACCTTCA 540
Query 541 GCGATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAGGTAAATGGAATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 GCGATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAGGTACATGGAATG 600
Query 601 GGACTAAATACTCCTCCTACACCATTATTAGCTTATGATCATACTGCTCCAAGAGGAAAG 660
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 601 GGACTAAATACTCCTCCTACACCATTATTAGCTTATGATCGTAGTGCTCCAAGAGGAAAG 660
Query 661 CTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTATTTAAGTCATTAACC 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 CTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTGTTTAAGTCATTAACC 720
Query 721 GGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTCATTTGGATTTTGACAGAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTCATTTGGATTTTGACAGAT 780
Query 781 GTCATCCATTATGGTGACTTAGAGAGACAAAACCTAAAACTTCCACATGCTTTGTCTCGG 840
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 781 GTCATCCATTATGGTGACTTAGAGAGACAACACCTAAAACTTCCACATGCTTTGTCTCGG 840
Query 841 ATTGATTCACAAGGAGCTTTGTTTTTCCTTGGGATTTTGTTAGCTATGAGCAGTCTTGAT 900
|||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||
Sbjct 841 ATTGATTCACAAGGAGCTTTATTTTTCCTTGGGATTTTGCTATCTATGAGCAGTCTTGAT 900
Query 901 GCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCTCATATAGCCAATGTTGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCTCATATAGCCAATGTTGAA 960
Query 961 CTGATAGCAAGTATTATTGGTGTGGTGTCAGCCATCATAGATAATGTCCCATTGGTTGCA 1020
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 961 CTGATTGCAAGTATTATTGGAGTGGTATCAGCCATCATAGATAATGTCCCATTGGTTGCG 1020
Query 1021 GCAACTATGGGGATGTATGATCTCTCAAGATTCCCTCAAGATTCTGAGTTTTGGCAACTC 1080
||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1021 GCAACAATGGGGATGTATGACCTCTCAACATTCCCTCAAGATTCTGAGTTTTGGCAACTC 1080
Query 1081 ATTTCCTTTTGCGCTGGAACAGGCGGTTCCATGCTTATTACTGGATCTGCTGCTGGAGTA 1140
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1081 ATTTCATTTTGCGCTGGAACAGGCGGTTCCATGCTTATTACTGGGTCTGCTGCTGGAGTA 1140
Query 1141 GCCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTATTTTCGTAAGGTGAGTGGTTTT 1200
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1141 ATCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTACTTTCGTAAGGTGAGCGGTTTT 1200
Query 1201 GCTTTTGCTGGTTTTACTGCGGGTATCGTGACTTACCTGGTGGTTCACTATCTCTCCCTG 1260
|||||||| ||||||||||| |||||| |||||||||| | ||||||| | || |||||
Sbjct 1201 GCTTTTGCGGGTTTTACTGCTGGTATCATGACTTACCTCGCGGTTCACAA-CT-TCCCTC 1258
Query 1261 TTTAA 1265
|||||
Sbjct 1259 TTTAA 1263
> AT3G19490.1 | Symbols: ATNHD1, NHD1 | sodium:hydrogen antiporter
1 | chr3:6754615-6758261 REVERSE LENGTH=2125
Length=2125
Score = 959 bits (519), Expect = 0.0
Identities = 1026/1268 (81%), Gaps = 45/1268 (4%)
Strand=Plus/Plus
Query 1 ATGGCATTGTTGTTTGGAATAGGATATG-TGTTCATCATCTTCGAGGAGTGTTTATCTTT 59
|||||||||||||||||||||||||| | || ||||||||| || |||| |||| ||||
Sbjct 561 ATGGCATTGTTGTTTGGAATAGGATACGCTG-GCATCATCTTTGAAGAGTCTTTAGCTTT 619
Query 60 TAGTAAATGCGGAATAGCACTTTTGATGGCCGTCAGTTTGTGGGTTGTGCGAAGCATCGA 119
|| |||| | ||||||| |||||||||||| || ||||||||||||||||| ||||| |
Sbjct 620 TAATAAAAGTGGAATAGGACTTTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGG 679
Query 120 GACAT-C-TCTA--GAAATTGTTACTTTAGAGCTTCAACACGCAACAAG-TGAAGTTAGT 174
| | | | || | ||||| | | |||||| |||||||| ||||| || ||||||||||
Sbjct 680 GGC-TCCTTCAACTGAAATAGCTGTTTTAGATCTTCAACATGCAAC-AGCTGAAGTTAGT 737
Query 175 CAAATAGT-GTTCTATATGCTTGGCGCGATGACTATTGTGGAGATAATTGATGTTCATCA 233
||||||| || | | |||||||||| ||||| |||||||||||| |||||| ||| ||
Sbjct 738 GAAATAGTATTTTTCT-TGCTTGGCGCAATGACCATTGTGGAGATAGTTGATGCTCACCA 796
Query 234 AGGATTCAAGCTGGTTACAGATTGTAT-AACATCTAGGAAACCGAAGATACTTTTATGGA 292
||| || ||| |||||||||| ||| | || || |||| || |||| ||||||||||
Sbjct 797 AGGGTTTAAGTTGGTTACAGACAATATCACCA-CTCGGAAGCCAAAGACACTTTTATGGG 855
Query 293 TGATTGGTTTTGCGACCTTT-TTCCTCAGCTCGGTTCTTGACAATCTAACAACTACTGTT 351
|| |||| |||| || |||| || ||||| ||| |||| |||||||| || |||| ||
Sbjct 856 TGGTTGGCTTTGTGA-CTTTCTTTCTCAGTTCGATTCTAGACAATCTGACCTCTACCATT 914
Query 352 GTTATGGTTTCGCTACTGA-GAAGACTAGTTCCTCCATCAGAATACCGCAAGCTTTTAGG 410
|| |||||||| || | | ||| ||| ||||| | |||||| |||||||| ||| ||||
Sbjct 915 GTCATGGTTTCTTTAATAAGGAA-ACTGGTTCCACAATCAGAGTACCGCAAACTTCTAGG 973
Query 411 AGCAGTTGTGGTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATATTAC 470
|| || || || ||||||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 974 AGGTGTGGTAGTGATAGCAGCAAATGCAGGAGGAGCATGGACTCCAATTGGTGATGTTAC 1033
Query 471 TACAACTATGCTATGGATAAATGGCCATATATCAACATTTTCGACTATAAAGAACCtttt 530
|||||||||| ||||||| |||| || ||||| || || ||||||| ||| |||||||
Sbjct 1034 TACAACTATGTTATGGATTCATGGTCAGATATCCACCTTGCCGACTATGAAGGACCTTTT 1093
Query 531 tttACCTTCAGCGAT-T-TCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAG 588
| ||||||| | | | | ||||||| ||||||||| || |||||||| ||||||||||||
Sbjct 1094 TCTACCTTC-G-GTTGTGTCTCTTGCTGTTCCACTAGCCCTCATGTCTTTGACCAGTGAG 1151
Query 589 GTAAATGGAATGGGACTAAATACTCCTCCTACACCAT-TATTAGCTTATGATCATACT-G 646
|||||||||| || || | | ||||| | || |||| |||| ||| | | | |
Sbjct 1152 GTAAATGGAAAGGAAC--AGGA----TCCTA-AAGATGTATTGGCTTCTGAAAAGA-TGG 1203
Query 647 CTCCAAGAGGAAAGCTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTAT 706
|||||||||| ||||| || ||||||||||| ||||||| ||| ||||||| ||| | |
Sbjct 1204 CTCCAAGAGGGAAGCTAGTTTTTGGAGTTGGCCTTGGAGCATTGGTTTTTGTTCCAGTCT 1263
Query 707 TT-AAGTCAT-TAACCGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGT-CA 763
|| ||| | | |||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1264 TTAAAG-C-TCTAACTGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTTC- 1320
Query 764 TTTGGATTTTGACAGATGTCATCCATTATGGTGACTTAGAGAGACAAAACCTAAAACTTC 823
||||||| |||||||||| ||| ||||| ||||| | ||| |||||||| || ||| | |
Sbjct 1321 TTTGGATCTTGACAGATGCCATTCATTACGGTGAATCAGAAAGACAAAAGCTCAAAGTAC 1380
Query 824 CACATGCTTTGTCTCGGATTGATTCACAAGGAGCTTTGTTTTTCCTTGGGATT-TTGTTA 882
| || || || ||||| || || ||||||| ||| |||||||||| |||||| || |||
Sbjct 1381 CTCAAGCCTTATCTCGAATAGACACACAAGGTGCTCTGTTTTTCCTCGGGATTCTT-TTA 1439
Query 883 GCTATGAGCAGTCTTGATGCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCT 942
| | ||||| ||||| || |||||||| ||| | |||||| ||||| ||||||||
Sbjct 1440 TCCGTAAGCAGCCTTGAGGCAGCTGGGATACTCCGGGAGATTGCAAACTACCTTGATGC- 1498
Query 943 CA-TATAGCCAATGTTGAACTGATAGCAAGTATTATTGGTGTGGTGTCAGCCATCATAGA 1001
|| |||| |||| ||||| || || |||||| ||| ||||| || ||||| ||||||||
Sbjct 1499 CAATATACCCAACGTTGAGCTCATTGCAAGTGCTATCGGTGTTGTATCAGCAATCATAGA 1558
Query 1002 TAATGTCCCATTGGTTGCAGCAACTATGGGGATGTATGATCTCTCAA-GATTCCCTCAAG 1060
||||| ||| |||||||||| ||||||||||||||||||||| || | ||||||||||
Sbjct 1559 CAATGTTCCACTGGTTGCAGCGACTATGGGGATGTATGATCTCACATCG-TTCCCTCAAG 1617
Query 1061 ATTCTGAGTTTTGGCAACTCATTTCCTTTTGCGCTGGAACAGGCGGTTCCATGCTTATTA 1120
||||||| |||||||| |||||| | || || || || || || ||||| |||||| | |
Sbjct 1618 ATTCTGAATTTTGGCAGCTCATTGCATTCTGTGCCGGCACTGGTGGTTCGATGCTTGTCA 1677
Query 1121 CTGGATCTGCTGCTGGAGTAGCCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTATT 1180
||| ||||||||||| |||||||||||| | |||||||||||| |||||||||||||||
Sbjct 1678 TTGGTTCTGCTGCTGGTGTAGCCTTCATGGGGATGGAGAAAGTCGATTTCTTTTGGTATT 1737
Query 1181 TTCGTAAGGTGAGTGGTTTTGCTTTTGCTGGTTTTACTGCGGGTATCGT-GACTTACCTG 1239
| || ||||| |||||||||||||||||||| | | |||| ||||||| | |||| |||
Sbjct 1738 TCCGAAAGGTTAGTGGTTTTGCTTTTGCTGGCTATGCTGCTGGTATCGCAG-CTTATCTG 1796
Query 1240 GTGGTTCA 1247
| |||||
Sbjct 1797 GCCGTTCA 1804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5