BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg337140 Length=1272 Score E Sequences producing significant alignments: (Bits) Value AT1G49810.1 | Symbols: ATNHD2, NHD2 | Na+/H+ antiporter 2 | chr... 2013 0.0 AT3G19490.1 | Symbols: ATNHD1, NHD1 | sodium:hydrogen antiporte... 959 0.0 > AT1G49810.1 | Symbols: ATNHD2, NHD2 | Na+/H+ antiporter 2 | chr1:18440013-18442237 REVERSE LENGTH=1263 Length=1263 Score = 2013 bits (1090), Expect = 0.0 Identities = 1207/1265 (95%), Gaps = 2/1265 (0%) Strand=Plus/Plus Query 1 ATGGCATTGTTGTTTGGAATAGGATATGTGTTCATCATCTTCGAGGAGTGTTTATCTTTT 60 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| Sbjct 1 ATGGCATTGTTGTTTGGAATAGGATATGTGTTGATCATCTTCGAGGAGTCTTTATCATTT 60 Query 61 AGTAAATGCGGAATAGCACTTTTGATGGCCGTCAGTTTGTGGGTTGTGCGAAGCATCGAG 120 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 AGTAAAAGCGGAATAGCACTTTTGATGGCCGTTAGTTTGTGGGTTGTGCGAAGCATCGAG 120 Query 121 ACATCTCTAGAAATTGTTACTTTAGAGCTTCAACACGCAACAAGTGAAGTTAGTCAAATA 180 || ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 ACTTCTGTAGAAATTGTTACTTTAGAGCTTCAACACGCAACAAGTGAAGTTAGCCAAATA 180 Query 181 GTGTTCTATATGCTTGGCGCGATGACTATTGTGGAGATAATTGATGTTCATCAAGGATTC 240 |||||||| ||||| || || ||||| |||||||| |||||||||| |||||||||||| Sbjct 181 GTGTTCTACATGCTCGGAGCAATGACCATTGTGGAAATAATTGATGCTCATCAAGGATTT 240 Query 241 AAGCTGGTTACAGATTGTATAACATCTAGGAAACCGAAGATACTTTTATGGATGATTGGT 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 241 AAGCTGGTTACAGATTGTATAACATCTAGGAAACCGAAGATACTTTTATGGGTGATTGGT 300 Query 301 TTTGCGACCTTTTTCCTCAGCTCGGTTCTTGACAATCTAACAACTACTGTTGTTATGGTT 360 || |||||||||||||||||||| ||||||||||| |||||| ||||| |||| ||||| Sbjct 301 TTCGCGACCTTTTTCCTCAGCTCTGTTCTTGACAACCTAACATCTACTATTGTAATGGTG 360 Query 361 TCGCTACTGAGAAGACTAGTTCCTCCATCAGAATACCGCAAGCTTTTAGGAGCAGTTGTG 420 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 361 TCGCTACTGAGAAGACTAATTCCTCCATCAGAATACCGCAAACTTTTAGGAGCAGTTGTG 420 Query 421 GTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATATTACTACAACTATG 480 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 421 GTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATGTTACTACAACTATG 480 Query 481 CTATGGATAAATGGCCATATATCAACATTTTCGACTATAAAGAACCtttttttACCTTCA 540 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CTATGGATACATGGCCATATATCAACATTTTCGACTATAAAGAACCTTTTTTTACCTTCA 540 Query 541 GCGATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAGGTAAATGGAATG 600 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 541 GCGATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAGGTACATGGAATG 600 Query 601 GGACTAAATACTCCTCCTACACCATTATTAGCTTATGATCATACTGCTCCAAGAGGAAAG 660 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 601 GGACTAAATACTCCTCCTACACCATTATTAGCTTATGATCGTAGTGCTCCAAGAGGAAAG 660 Query 661 CTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTATTTAAGTCATTAACC 720 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 661 CTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTGTTTAAGTCATTAACC 720 Query 721 GGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTCATTTGGATTTTGACAGAT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTCATTTGGATTTTGACAGAT 780 Query 781 GTCATCCATTATGGTGACTTAGAGAGACAAAACCTAAAACTTCCACATGCTTTGTCTCGG 840 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 781 GTCATCCATTATGGTGACTTAGAGAGACAACACCTAAAACTTCCACATGCTTTGTCTCGG 840 Query 841 ATTGATTCACAAGGAGCTTTGTTTTTCCTTGGGATTTTGTTAGCTATGAGCAGTCTTGAT 900 |||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| Sbjct 841 ATTGATTCACAAGGAGCTTTATTTTTCCTTGGGATTTTGCTATCTATGAGCAGTCTTGAT 900 Query 901 GCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCTCATATAGCCAATGTTGAA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCTCATATAGCCAATGTTGAA 960 Query 961 CTGATAGCAAGTATTATTGGTGTGGTGTCAGCCATCATAGATAATGTCCCATTGGTTGCA 1020 ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 961 CTGATTGCAAGTATTATTGGAGTGGTATCAGCCATCATAGATAATGTCCCATTGGTTGCG 1020 Query 1021 GCAACTATGGGGATGTATGATCTCTCAAGATTCCCTCAAGATTCTGAGTTTTGGCAACTC 1080 ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 1021 GCAACAATGGGGATGTATGACCTCTCAACATTCCCTCAAGATTCTGAGTTTTGGCAACTC 1080 Query 1081 ATTTCCTTTTGCGCTGGAACAGGCGGTTCCATGCTTATTACTGGATCTGCTGCTGGAGTA 1140 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1081 ATTTCATTTTGCGCTGGAACAGGCGGTTCCATGCTTATTACTGGGTCTGCTGCTGGAGTA 1140 Query 1141 GCCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTATTTTCGTAAGGTGAGTGGTTTT 1200 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1141 ATCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTACTTTCGTAAGGTGAGCGGTTTT 1200 Query 1201 GCTTTTGCTGGTTTTACTGCGGGTATCGTGACTTACCTGGTGGTTCACTATCTCTCCCTG 1260 |||||||| ||||||||||| |||||| |||||||||| | ||||||| | || ||||| Sbjct 1201 GCTTTTGCGGGTTTTACTGCTGGTATCATGACTTACCTCGCGGTTCACAA-CT-TCCCTC 1258 Query 1261 TTTAA 1265 ||||| Sbjct 1259 TTTAA 1263 > AT3G19490.1 | Symbols: ATNHD1, NHD1 | sodium:hydrogen antiporter 1 | chr3:6754615-6758261 REVERSE LENGTH=2125 Length=2125 Score = 959 bits (519), Expect = 0.0 Identities = 1026/1268 (81%), Gaps = 45/1268 (4%) Strand=Plus/Plus Query 1 ATGGCATTGTTGTTTGGAATAGGATATG-TGTTCATCATCTTCGAGGAGTGTTTATCTTT 59 |||||||||||||||||||||||||| | || ||||||||| || |||| |||| |||| Sbjct 561 ATGGCATTGTTGTTTGGAATAGGATACGCTG-GCATCATCTTTGAAGAGTCTTTAGCTTT 619 Query 60 TAGTAAATGCGGAATAGCACTTTTGATGGCCGTCAGTTTGTGGGTTGTGCGAAGCATCGA 119 || |||| | ||||||| |||||||||||| || ||||||||||||||||| ||||| | Sbjct 620 TAATAAAAGTGGAATAGGACTTTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGG 679 Query 120 GACAT-C-TCTA--GAAATTGTTACTTTAGAGCTTCAACACGCAACAAG-TGAAGTTAGT 174 | | | | || | ||||| | | |||||| |||||||| ||||| || |||||||||| Sbjct 680 GGC-TCCTTCAACTGAAATAGCTGTTTTAGATCTTCAACATGCAAC-AGCTGAAGTTAGT 737 Query 175 CAAATAGT-GTTCTATATGCTTGGCGCGATGACTATTGTGGAGATAATTGATGTTCATCA 233 ||||||| || | | |||||||||| ||||| |||||||||||| |||||| ||| || Sbjct 738 GAAATAGTATTTTTCT-TGCTTGGCGCAATGACCATTGTGGAGATAGTTGATGCTCACCA 796 Query 234 AGGATTCAAGCTGGTTACAGATTGTAT-AACATCTAGGAAACCGAAGATACTTTTATGGA 292 ||| || ||| |||||||||| ||| | || || |||| || |||| |||||||||| Sbjct 797 AGGGTTTAAGTTGGTTACAGACAATATCACCA-CTCGGAAGCCAAAGACACTTTTATGGG 855 Query 293 TGATTGGTTTTGCGACCTTT-TTCCTCAGCTCGGTTCTTGACAATCTAACAACTACTGTT 351 || |||| |||| || |||| || ||||| ||| |||| |||||||| || |||| || Sbjct 856 TGGTTGGCTTTGTGA-CTTTCTTTCTCAGTTCGATTCTAGACAATCTGACCTCTACCATT 914 Query 352 GTTATGGTTTCGCTACTGA-GAAGACTAGTTCCTCCATCAGAATACCGCAAGCTTTTAGG 410 || |||||||| || | | ||| ||| ||||| | |||||| |||||||| ||| |||| Sbjct 915 GTCATGGTTTCTTTAATAAGGAA-ACTGGTTCCACAATCAGAGTACCGCAAACTTCTAGG 973 Query 411 AGCAGTTGTGGTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATATTAC 470 || || || || ||||||||||||||||||||||| |||||||| ||||||||| |||| Sbjct 974 AGGTGTGGTAGTGATAGCAGCAAATGCAGGAGGAGCATGGACTCCAATTGGTGATGTTAC 1033 Query 471 TACAACTATGCTATGGATAAATGGCCATATATCAACATTTTCGACTATAAAGAACCtttt 530 |||||||||| ||||||| |||| || ||||| || || ||||||| ||| ||||||| Sbjct 1034 TACAACTATGTTATGGATTCATGGTCAGATATCCACCTTGCCGACTATGAAGGACCTTTT 1093 Query 531 tttACCTTCAGCGAT-T-TCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAG 588 | ||||||| | | | | ||||||| ||||||||| || |||||||| |||||||||||| Sbjct 1094 TCTACCTTC-G-GTTGTGTCTCTTGCTGTTCCACTAGCCCTCATGTCTTTGACCAGTGAG 1151 Query 589 GTAAATGGAATGGGACTAAATACTCCTCCTACACCAT-TATTAGCTTATGATCATACT-G 646 |||||||||| || || | | ||||| | || |||| |||| ||| | | | | Sbjct 1152 GTAAATGGAAAGGAAC--AGGA----TCCTA-AAGATGTATTGGCTTCTGAAAAGA-TGG 1203 Query 647 CTCCAAGAGGAAAGCTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTAT 706 |||||||||| ||||| || ||||||||||| ||||||| ||| ||||||| ||| | | Sbjct 1204 CTCCAAGAGGGAAGCTAGTTTTTGGAGTTGGCCTTGGAGCATTGGTTTTTGTTCCAGTCT 1263 Query 707 TT-AAGTCAT-TAACCGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGT-CA 763 || ||| | | |||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1264 TTAAAG-C-TCTAACTGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTTC- 1320 Query 764 TTTGGATTTTGACAGATGTCATCCATTATGGTGACTTAGAGAGACAAAACCTAAAACTTC 823 ||||||| |||||||||| ||| ||||| ||||| | ||| |||||||| || ||| | | Sbjct 1321 TTTGGATCTTGACAGATGCCATTCATTACGGTGAATCAGAAAGACAAAAGCTCAAAGTAC 1380 Query 824 CACATGCTTTGTCTCGGATTGATTCACAAGGAGCTTTGTTTTTCCTTGGGATT-TTGTTA 882 | || || || ||||| || || ||||||| ||| |||||||||| |||||| || ||| Sbjct 1381 CTCAAGCCTTATCTCGAATAGACACACAAGGTGCTCTGTTTTTCCTCGGGATTCTT-TTA 1439 Query 883 GCTATGAGCAGTCTTGATGCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCT 942 | | ||||| ||||| || |||||||| ||| | |||||| ||||| |||||||| Sbjct 1440 TCCGTAAGCAGCCTTGAGGCAGCTGGGATACTCCGGGAGATTGCAAACTACCTTGATGC- 1498 Query 943 CA-TATAGCCAATGTTGAACTGATAGCAAGTATTATTGGTGTGGTGTCAGCCATCATAGA 1001 || |||| |||| ||||| || || |||||| ||| ||||| || ||||| |||||||| Sbjct 1499 CAATATACCCAACGTTGAGCTCATTGCAAGTGCTATCGGTGTTGTATCAGCAATCATAGA 1558 Query 1002 TAATGTCCCATTGGTTGCAGCAACTATGGGGATGTATGATCTCTCAA-GATTCCCTCAAG 1060 ||||| ||| |||||||||| ||||||||||||||||||||| || | |||||||||| Sbjct 1559 CAATGTTCCACTGGTTGCAGCGACTATGGGGATGTATGATCTCACATCG-TTCCCTCAAG 1617 Query 1061 ATTCTGAGTTTTGGCAACTCATTTCCTTTTGCGCTGGAACAGGCGGTTCCATGCTTATTA 1120 ||||||| |||||||| |||||| | || || || || || || ||||| |||||| | | Sbjct 1618 ATTCTGAATTTTGGCAGCTCATTGCATTCTGTGCCGGCACTGGTGGTTCGATGCTTGTCA 1677 Query 1121 CTGGATCTGCTGCTGGAGTAGCCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTATT 1180 ||| ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||| Sbjct 1678 TTGGTTCTGCTGCTGGTGTAGCCTTCATGGGGATGGAGAAAGTCGATTTCTTTTGGTATT 1737 Query 1181 TTCGTAAGGTGAGTGGTTTTGCTTTTGCTGGTTTTACTGCGGGTATCGT-GACTTACCTG 1239 | || ||||| |||||||||||||||||||| | | |||| ||||||| | |||| ||| Sbjct 1738 TCCGAAAGGTTAGTGGTTTTGCTTTTGCTGGCTATGCTGCTGGTATCGCAG-CTTATCTG 1796 Query 1240 GTGGTTCA 1247 | ||||| Sbjct 1797 GCCGTTCA 1804 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62549879070 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5