BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337192
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50400.1 | Symbols: | Eukaryotic porin family protein | chr... 1297 0.0
> AT1G50400.1 | Symbols: | Eukaryotic porin family protein | chr1:18668155-18670546
FORWARD LENGTH=1157
Length=1157
Score = 1297 bits (702), Expect = 0.0
Identities = 854/927 (92%), Gaps = 12/927 (1%)
Strand=Plus/Plus
Query 1 ATGGACGGCTTTCCACCACCGATTTACACAGCGCAAGTCGATGCGAAGACCAAACTTGAC 60
||||| |||||| ||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGGAGGGCTTTTCACCACCGATTAACACTGCGCAAGTCGATGCAAAGACCAAACTTGAC 60
Query 61 GAGAAAGTGGATTACTCAAACCTCCCTTGCCCTGTCGTCTATGAGGAAATCCACCGTGAA 120
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 61 GAGAAAGTGGATTACTCAAACCTCCCTTGCCCTGTCCTCTATGAGGAACTCAACCGTGAA 120
Query 121 GCTCAC-ATGGCTTTAAAGCCAGACCTATTTGAGGGTTTCCGCCTCGACTATAACAAGTT 179
||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 GCT-ACCATGGCTTTAAAGCCAGAGCTATTTGAGGGTTTCCGCCTCGACTATAACAAGTC 179
Query 180 G-TTAAACCAGAAGTTTTTTCTCAGCCATAGCGTATTGATGGGACCAGCTGAGGTTC--A 236
| |||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||| |
Sbjct 180 GCTTAA-CCAGAAGTTTTTTCTCAGCCATAGCATATTGATGGGGCCAACTGAGGTTCCTA 238
Query 237 ATC----TCCATCATCCGAAATAATCAAAATCCCAACTGCCAATTATGAATTTGGTGCTA 292
||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 239 ATCCAACTCCATCATCCGAAATAATCAAAATTCCAACTGCCAATTATGACTTTGGTGCTG 298
Query 293 ATTACGTTGATCCAAAGCTATGGCTTTTCGGAAGGATCACAACGGATGGTAGACTAAATG 352
|| | | ||||||||||||| ||| ||||||||||||| ||||| |||||||||||||
Sbjct 299 GTTTCATCGATCCAAAGCTATATCTTATCGGAAGGATCACGACGGACGGTAGACTAAATG 358
Query 353 CGAGAGTCAAGTACGATTTGACTGATAATTTTTCCATCAAGGCTAATGCTCTGCTGACAG 412
|||||| ||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 359 CGAGAGCCAAGTTCGATTTAACTGACAATTTTTCCGTCAAGGCTAATGCTCTGCTGACAG 418
Query 413 ATGAACAAGATAAGTCGCAAGGCCACTTCACCTTTGATTACAAGGGGTCAGACTACAGAA 472
||||| |||||||||||||||||||| || | |||||||||||||||| ||||||||||
Sbjct 419 ATGAAGAAGATAAGTCGCAAGGCCACCTCGTCATTGATTACAAGGGGTCTGACTACAGAA 478
Query 473 CTCAGCTTCAGCTTGGAAACAATTCCCTTTATGGAGCTAACTATATACAGCATGTGACAC 532
|||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct 479 CTCAGCTTCAGCTTGGAAACAATTCCGTTTATGCAGCTAACTATATTCAGCATGTGACAC 538
Query 533 CACACCTGTCTTTGGGTGCTGAGGCTTTCTGGCTTGGTCAGCAACTGATGTCGGGTGTTG 592
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CACACCTGTCTTTGGGTGGTGAGGCTTTCTGGCTTGGTCAGCAACTGATGTCGGGTGTTG 598
Query 593 GTTATGCAGCTCGATATGAGACCGACAAAATGGTTGCCAGTGGGCAAATTGCTTCCACTG 652
|||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct 599 GTTATGCAGCTCGATATGAGACTGACAAAACGGTTGCCTCTGGGCAAATTGCTTCCACTG 658
Query 653 GTCTGGCTGTCATGAACTATGTTCATAAGGTTTCAGAGAAGGTGTCTTTTGCTACGGACT 712
|| |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |
Sbjct 659 GTGTGGCTGTCATGAACTATGTTCATAAGGTTTCAGAGAAGTTGTCATTTGCAACGGATT 718
Query 713 TCATTTACAATTTTTTATCACGAGATGTTACAGCTAGTGTCGGGTATGACTTCATTTTTA 772
|||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 719 TCATCTACAATTATTTGTCACGAGATGTTACAGCTAGTGTCGGGTATGACCTCATTACTA 778
Query 773 GACAGTCTCGATTAAGAGGAAAGATCGATTCTAAAGGTGTTG-CAGCTGCTTACCTTGAA 831
||||||||||||||||||||||| | |||||||| ||||||| | |||||||||||||||
Sbjct 779 GACAGTCTCGATTAAGAGGAAAGGTTGATTCTAACGGTGTTGTC-GCTGCTTACCTTGAA 837
Query 832 GAACAATTGCCTAGTGGACTCAGATTTCTTCTATCTGCGGAGGTGGATCATGTGAGGAAG 891
||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 838 GAACAATTGCCTATTGGACTCAGATTTCTTCTATCTGCAGAGGTGGATCATGTGAAGAAG 897
Query 892 GATTACAAGTTTGGTTTCGGTGTTAAC 918
|||||||||||||||||||||||||||
Sbjct 898 GATTACAAGTTTGGTTTCGGTGTTAAC 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5