BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337228
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50830.1 | Symbols: | Aminotransferase-like, plant mobile d... 699 0.0
AT5G18510.1 | Symbols: | Aminotransferase-like, plant mobile d... 503 2e-141
AT1G51538.1 | Symbols: | Aminotransferase-like, plant mobile d... 276 5e-73
> AT1G50830.1 | Symbols: | Aminotransferase-like, plant mobile
domain family protein | chr1:18835271-18837942 REVERSE LENGTH=2672
Length=2672
Score = 699 bits (378), Expect = 0.0
Identities = 536/611 (88%), Gaps = 15/611 (2%)
Strand=Plus/Plus
Query 556 TTGAAGAATTGGAAACC-TCTTCGGTTTTATGTTGAAGAAGCTATGTGGGTGACTGTTGA 614
||||| |||||||| || | |||||||||| |||| |||||||| ||||||||||||||
Sbjct 1098 TTGAACAATTGGAACCCAT-TTCGGTTTTACCTTGAGGAAGCTATTTGGGTGACTGTTGA 1156
Query 615 TGAGAGTATTGATGATGAGTTTGCTTATTTTGCAAGATGTGTGAGAGTTTCTCAGCTTGC 674
||| |||||||||||||||||||||| |||||| | ||||||| |||||||||| |||
Sbjct 1157 TGAAAGTATTGATGATGAGTTTGCTTCTTTTGCTCGGTGTGTGACAGTTTCTCAGATTGT 1216
Query 675 TGGAAATGGTTTTGTAAAGGATTACTTCCCGAATAGAGTGGCGATG-CAGTTTGGTTTGG 733
|||| ||||||||||| ||||||||||||| ||||||||||||| | ||||| |||||||
Sbjct 1217 TGGAGATGGTTTTGTAGAGGATTACTTCCCAAATAGAGTGGCGA-GACAGTTCGGTTTGG 1275
Query 734 CTCAAGATCTTCCTGGTTTGGTTACTCGTCATAGAATCTTCACAGAAAAGGAGGCTTGGG 793
|||||||||||||||||||| |||| |||| |||| || |||||||||||| ||||||
Sbjct 1276 ATCAAGATCTTCCTGGTTTGGCTACTTGTCAAAGAAACTCCACAGAAAAGGAAGCTTGGA 1335
Query 794 GCGAGTACAGTAAGTCTTTTGA-TGGTTTAAAGCTCTACATGCCTTCTCGCCTTGATCGA 852
|| |||| ||||||| || | ||||||||| |||||||||||||||||||| |||| |
Sbjct 1336 ATGATTACAATAAGTCTCTT-ATTGGTTTAAACCTCTACATGCCTTCTCGCCTCGATCAA 1394
Query 853 GGTTCTGTCACTTCGAGATACCGAGTCTGGTGGCGGAAATCAGTTTCAAAGTTTCTTG-G 911
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 1395 GGTTCTGTCACTGCGAGATACCGAGTCTGGTGGCTGAAATCAGTTTCAAAGTTTC-TGAG 1453
Query 912 TTCTGCAGAGATGCATAAAGAATCAACTGAAACTTTTAATGCAAGGAAGAAAGTTGAACA 971
| ||| ||||||| | |||||||||||||||||||||| |||||||||| | |||| ||
Sbjct 1454 TCCTGAAGAGATGAAGGAAGAATCAACTGAAACTTTTAACGCAAGGAAGACATTTGATCA 1513
Query 972 TTATGACGAAG---ATGTTGATGATATTGATACATCTCCCAAGGTACTGCCTTTGAGTCA 1028
||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1514 TTATGACGAAGATTATGATGATGATATTGATGCATCTCCCAAGGTACTGCCTTTGAGTCA 1573
Query 1029 TGTGGTTCAGAGATTGAAAGAAGGCTTTTCT-GCAAAACACAGAAGATCTGTGATGCATA 1087
||| |||||| |||| ||||||| ||||| ||||||| |||||| |||||||| ||||
Sbjct 1574 GGTGTTTCAGAAATTGGAAGAAGG-TTTTCCCGCAAAACGCAGAAGGTCTGTGATACATA 1632
Query 1088 GATCAGTAAAGCAAGATAAGATTGGTGGGT-TGGTGAACAGTAGTGTATCTTCAGGTTGG 1146
||| ||||||||||||||||| ||||||| || |||||||| ||||||| |||||||||
Sbjct 1633 GATTGGTAAAGCAAGATAAGATAGGTGGGTGTG-TGAACAGTCGTGTATCATCAGGTTGG 1691
Query 1147 AAGATGAACAA 1157
|||||||||||
Sbjct 1692 AAGATGAACAA 1702
Score = 183 bits (99), Expect = 3e-45
Identities = 216/271 (80%), Gaps = 14/271 (5%)
Strand=Plus/Plus
Query 118 ACCATAACGCTT-GAGGATGTAATGGTTCTTCTTGGGTTTTCTGTTTTGGGTTCTCCTGT 176
|||||||| || |||||||||||||| ||||| |||||||| |||||||| ||||| ||
Sbjct 501 ACCATAAC-TTTAGAGGATGTAATGGTGCTTCTAGGGTTTTCCGTTTTGGGCTCTCCGGT 559
Query 177 TTTTACCCCTTTAAAAAGCTCAGAGATGAGAGATGCCGTGGAGAAATTGGAGAAAGAAAG 236
||| |||||||| ||| ||| |||| ||||||| | || ||||| ||||||| | |||
Sbjct 560 CTTTGCCCCTTTAGAAACCTCGGAGACGAGAGATTCGGTAAAGAAACTGGAGAATGTAAG 619
Query 237 ATTTGAGAATA-G-AT-GCAG--C-GAC-GGTAC-TTTGAAG-GAAACACCATGGATCTC 287
| | || ||| | || |||| | ||| || | | || || ||| | ||||| | ||
Sbjct 620 AATCCAGCATATGAATAGCAGCACAGACAGG--CGTGTG-AGCCAAAAATCATGGGTTTC 676
Query 288 GAGCTTTTTGGGTAGAGGTGGTCAGATGGAGCACGAAGCGTTTCTGGTATTGTGGCTTTC 347
|| ||| |||||||||||||| | |||||||| | ||||||||||||||||||||||||
Sbjct 677 GACCTTCTTGGGTAGAGGTGGGGACATGGAGCATGTAGCGTTTCTGGTATTGTGGCTTTC 736
Query 348 GCTTTTTGTTTTTCCTGCTACATCTCGTCGT 378
|||||| || ||||| | || ||||||||||
Sbjct 737 GCTTTTCGTATTTCCAGTTAAATCTCGTCGT 767
> AT5G18510.1 | Symbols: | Aminotransferase-like, plant mobile
domain family protein | chr5:6141778-6143886 REVERSE LENGTH=2109
Length=2109
Score = 503 bits (272), Expect = 2e-141
Identities = 475/570 (83%), Gaps = 26/570 (5%)
Strand=Plus/Plus
Query 556 TTGAAGAATTGGAAACCTCTTCGGTTTTATGTTGAAGAAGCTATGTGGGTGACTGTTGAT 615
|||||||| ||||| || ||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 949 TTGAAGAACTGGAACCCACTTCGGTTTTACGTTGATGAAGCTATGTGGCTGACTGTTGAT 1008
Query 616 GAGAGTATTGATGATG-AGTTTGCTTATTTTGCAAGATGTGTGAGAGTTTC-TCAGCTTG 673
|| ||| ||||||||| | ||||||| |||||| ||||||||| |||||| | | ||||
Sbjct 1009 GACAGTGTTGATGATGCA-TTTGCTTCTTTTGCTCGATGTGTGAAAGTTTCAT-ACCTTG 1066
Query 674 CTGGAAATGGTTTTG-TAAAGGATTACTTCCCGAATAGAGTGGCGATGCAGTTTGGTTTG 732
||||||||||||||| | || ||||||||||| || ||||||||| |||||| ||||||
Sbjct 1067 CTGGAAATGGTTTTGTTGAA-GATTACTTCCCTTATCGAGTGGCGAGGCAGTTCGGTTTG 1125
Query 733 GCTCAAGATCTTCCTGGTTTGGTTACTCGTCATAGAATCTTCACAGAAAAGGAGGCTTGG 792
|||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 1126 TCTCAAGATCTTCCTGGTTTGGTTACTCGTCGTAGAAAAATCACAGAAAAGGATGCTTGG 1185
Query 793 GGCGAGTACAGTAAGTCTTTTGATGGTTTAAAGCTCTACATGCCTTCTCGCCTTGATCGA 852
| || |||||||| ||| |||| |||||||| |||||| ||||||||| |||||||||
Sbjct 1186 GATGATTACAGTAATTCTCTTGAGGGTTTAAATCTCTACTTGCCTTCTCAACTTGATCGA 1245
Query 853 GGTTCTGTCACTTCGAGATACCGAGTCTGGTGGCGGAAATCAGTTTCA-AAGT-TTCTTG 910
|||| ||||||| | || |||| || ||||||| ||||||| |||| || | || |||
Sbjct 1246 GGTTATGTCACTGCCAGGTACCAAGACTGGTGGTTTAAATCAGCTTCAGAA-TATT-TTG 1303
Query 911 GTTCTGCAGAGATGCATAAAGAATCAACTGAAACTTTTAATGCAAGGAAGAAAGTTGAAC 970
|||||| |||||| || |||||||| |||||| ||||| |||||||||| | | |||| |
Sbjct 1304 GTTCTGAAGAGATACAGAAAGAATCGACTGAAGCTTTTGATGCAAGGAATACATTTGATC 1363
Query 971 AT-TATGACGAAGATG-T--TGATG---ATATTGATACATCTCCCAAGGTAC-TGCCTTT 1022
|| | ||| |||||| | ||||| |||||||| |||| ||||||||| | |||||
Sbjct 1364 ATCT-TGATAAAGATGATGATGATGGTGATATTGATGTATCTACCAAGGTACCT-CCTTT 1421
Query 1023 GAGTCATGTGGTTCAGA-GATTGAAAGAAGGCTTTTCTGCAAAACACAGAAGATCTGTG- 1080
|||||| || ||||||| | ||| ||||||||||| ||||||||| ||||| ||| | |
Sbjct 1422 GAGTCAAGTAGTTCAGAAG-TTGGAAGAAGGCTTTACTGCAAAACGCAGAATATC-GAGG 1479
Query 1081 ATGCATAGATCAGTAAAGCA-AGATAAGAT 1109
||||||||||||| |||| | | |||||||
Sbjct 1480 ATGCATAGATCAGCAAAG-AGATATAAGAT 1508
Score = 171 bits (92), Expect = 2e-41
Identities = 165/199 (83%), Gaps = 9/199 (5%)
Strand=Plus/Plus
Query 1278 ATGCAAtgaaaaattgtgcagtgaagttaagaaa-gaagaagaaattgatgaaagattga 1336
||||| || ||| || |||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 1917 ATGCATTGGAAAGTTTTGCAGTGAAGTTAA-AAAGGAAGAAGATGTTGATGAAAGATTGA 1975
Query 1337 aacagagaaagCTTGCAATAAAGGAGATGGAATTGAAGCTCGAGGCACGTATTATTGAGA 1396
||||||| |||||||||| || |||||| | || |||| ||| ||||| ||| | |||
Sbjct 1976 GGCAGAGAACGCTTGCAATAGAGAAGATGGCACTGGAGCTGGAGACACGTCTTAGTAAGA 2035
Query 1397 TGGAGAAGACTTTGGCCA-TGATTAGAAAATGGAAAACCAGAGGAAAC-ATGACTGGAAA 1454
||||||||| ||||| || |||||||||||||||||||||||||||| | ||| |||
Sbjct 2036 TGGAGAAGAGTTTGG-CAGAGATTAGAAAATGGAAAACCAGAGGAAACCA-GACCAAAAA 2093
Query 1455 TGGAGTTTCTTCTGTTTAG 1473
||| ||| ||||| ||||
Sbjct 2094 TGG--TTT-TTCTGCTTAG 2109
> AT1G51538.1 | Symbols: | Aminotransferase-like, plant mobile
domain family protein | chr1:19113183-19115273 FORWARD LENGTH=2091
Length=2091
Score = 276 bits (149), Expect = 5e-73
Identities = 337/425 (79%), Gaps = 23/425 (5%)
Strand=Plus/Plus
Query 560 AGAATTGGAAACCTCTTCGGTTTTATGTTGAAGAAGCTATGTGGGTGACTGTTGATGAGA 619
||| |||||| |||| ||||||||| |||||||||||||||| ||||||||||||| |
Sbjct 950 AGATTTGGAACCCTCCTCGGTTTTACCCTGAAGAAGCTATGTGGATGACTGTTGATGACA 1009
Query 620 GTATTGATGAT-GAGTTTGCTTATTTTGCAAGATGTGTGAGAGTTTCTCAGCTTGCTGGA 678
| |||||||| || || | || ||||| ||||| |||||||||||||||||| |||
Sbjct 1010 ATCTTGATGATGGA-TTCGTTTCCTTTGCTCGATGTATGAGAGTTTCTCAGCTTGTTGGG 1068
Query 679 AATGGTTTTGTAAAGGATTACT-TCCCGAATAGAGTGGCGATGCAGTTTGGTTTGGCTCA 737
|||| |||| ||||||||| | || || ||||||| |||||||| || |||||||
Sbjct 1069 GTTGGTATTGTGGAGGATTACTAT-CCAAACCGAGTGGCAATGCAGTTCGGGCTGGCTCA 1127
Query 738 AGATCTTCCTGGTTTGGTTACTCG-TCATAGAATCTTCACAGAAAAGGAGGCTTGGGGCG 796
|||||||||||||||||||||| | |||||| | |||||||||||| || || |||| |
Sbjct 1128 AGATCTTCCTGGTTTGGTTACT-GATCATAGCAGCTTCACAGAAAAAGAAGCATGGGATG 1186
Query 797 AGT-ACAGTAAGTCTTTTGATGGTTTAAAGCTCTACATGCCTTCTCGCCTTGAT-CGAGG 854
|| ||| ||||||| |||||||||||| ||| ||||| |||||||| | | | |||
Sbjct 1187 -GTTACAATAAGTCTCTTGATGGTTTAATGCTTTACATACCTTCTCGTGTCGCTACGAC- 1244
Query 855 TTCTGTCACTTCGAGATACCGAGTCTGGTGGCGGAAATC-AGTTTCAAAGTTTCTTGGTT 913
|||||| ||| ||||| || | ||||||| |||||| | ||||||||||| || |
Sbjct 1245 TTCTGTTACTGAAAGATATCGTGACTGGTGGTTGAAATCTA-TTTCAAAGTTT-TT--T- 1299
Query 914 CTGCAGAGATGCATAAAGAATCAACTGAAACTTTTAATGCAAGGAAGA-AAGTTGAACAT 972
||| || | | | | |||||||||||||| ||| ||||||| || | || |||| |||
Sbjct 1300 CTG--GAT-T-CTTCA-GAATCAACTGAAACGTTTGATGCAAGTAACACAA-TTGATCAT 1353
Query 973 TATGA 977
|||||
Sbjct 1354 TATGA 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5