BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337272
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51250.1 | Symbols: | Plant self-incompatibility protein S1... 582 6e-166
AT1G51240.1 | Symbols: | Plant self-incompatibility protein S1... 544 3e-154
AT1G51230.1 | Symbols: | Plant self-incompatibility protein S1... 294 3e-79
> AT1G51250.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:19001544-19002215 REVERSE LENGTH=672
Length=672
Score = 582 bits (315), Expect = 6e-166
Identities = 362/385 (94%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 1 ATGTATTTTGGGATAAATGAAGCTTGCAAGAAAAATCATGTAGTAATTCATAACGAACTC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 100 ATGTATTTTGGGATAAATGAAGCTTGCAAAAAAAATCATGTAGTAATTCATAACGAAATC 159
Query 61 GGTCCTGGTATTGATCTCAATATTGCATGCCGGCAACTCAGCATAGAGCGCACACCTTCA 120
|||||||||||||||||||| ||||||||||||||| ||||| | | ||||||||||||
Sbjct 160 GGTCCTGGTATTGATCTCAACATTGCATGCCGGCAATTCAGCCCAAAACGCACACCTTCA 219
Query 121 AGGTTTCACACCCTAAAGTACAAAGATCCTTTTTATATCATTGAGTTTGCGGATAATAAT 180
| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct 220 ATGTTTCACACCCTAAAGTACAAAGATCCTTTTTACATCATTGAGTTCGCGGACAACAAT 279
Query 181 CAGCTACCTCATGGTGAAAAATGGTATTGTCTGCTTAGTCACGGAACTAGACCAAAATAT 240
||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 280 CAGCTACCTCACGGTGAGAAATGGTATTGTCTGATTAGTCACGGAACAAGACCAAAATAT 339
Query 241 TGGTTTGATATTGAAGTATATGC-TCAAGCCTATTATCCTCGATGTGGTCAGCTACGCTC 299
||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 340 TGGTTTGATATTGAAGTATAT-CGTCAAGGCTATTATCCTCGATGTGGTCAGCTACGCTC 398
Query 300 ATGGATTGCTAGAAAGGATGGGATTTGGTTTACAAGAAGATATCATAGTCCGCCAGGGCA 359
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 399 ATGGATTGCTAGAAAGGATGGGATTTGGTTTACAAGAAAATATCATAGTCCACCAGGGCA 458
Query 360 TGTACTTGATTGGAAAATCCAGTAA 384
||||||||||||||||||||||||
Sbjct 459 CGTACTTGATTGGAAAATCCAGTAA 483
> AT1G51240.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:19000509-19000892 REVERSE LENGTH=384
Length=384
Score = 544 bits (294), Expect = 3e-154
Identities = 357/387 (92%), Gaps = 6/387 (2%)
Strand=Plus/Plus
Query 1 ATGTATTTTGGG-ATAAATGAAGCTTGCAAGAAAAATCATGTAGTAATTCATAACGAACT 59
|||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1 ATGTATTTTGGGCA-AAATGAAGCTTGCAAAAAAAATCATGTAGTGATTCATAACGAACT 59
Query 60 CGGTCCTGGTATTGATCTCAATATTGCATGCCGGCAACTCAGCATAGAGCGCACACCTTC 119
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 60 CGGTCCTGGTATTGATCTCAACATTGCATGCCGACAATTCAGCATAGAGCGCACACCTTC 119
Query 120 AAGGTTTCACACCCTAAAGTACAAAGATCCTTTTTATATCATTGAGTTTGCGGATAATAA 179
|| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 120 AATGTTTCACACCCTAAAGTACAAAGATCCTTTTTATATCATTGAGTTCGAGGATAATAA 179
Query 180 TCAGCTACCTCATGGTGAAAAATGGTATTGTCTGCTTAGTCACGGAACTAGACCAAAATA 239
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct 180 TCAGCTACCTCATGGTGAAAGATGGTATTGTCTGCTTAGTCACGGTACTAGACCAAAGTA 239
Query 240 TTGGTTTGATATTGAAGTATAT-GCTCAAGCCTATTATCCTCGATGTGGTCAGCTACGCT 298
||||| |||||||||||||||| | ||||| ||||||||| | ||||||||||||||||
Sbjct 240 TTGGTATGATATTGAAGTATATCG-TCAAGGCTATTATCCAAGTTGTGGTCAGCTACGCT 298
Query 299 CATGGATTGCTAGA-AAGGATGGGATTTGGTTTACAAGAAGATATCATAGTCCGCCAGGG 357
|||||||||||| | ||| |||| ||||||||||||||||||||| |||| ||||||||
Sbjct 299 CATGGATTGCTAAACAAG-ATGGAATTTGGTTTACAAGAAGATATGATAGCCCGCCAGGA 357
Query 358 CATGTACTTGATTGGAAAATCCAGTAA 384
||||| ||| |||||||||| ||||||
Sbjct 358 CATGTTCTTAATTGGAAAATTCAGTAA 384
> AT1G51230.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:18997026-18997434 REVERSE LENGTH=409
Length=409
Score = 294 bits (159), Expect = 3e-79
Identities = 297/361 (82%), Gaps = 20/361 (6%)
Strand=Plus/Plus
Query 31 AAAAATCATGTAGTAATTCATAACGAACTCG-GTCCTGGTATTGA-TCTCAATATTGCAT 88
|||||||||||||||||||||||||| || | ||||||||||| | ||| || |||||||
Sbjct 34 AAAAATCATGTAGTAATTCATAACGAGCT-GAGTCCTGGTATT-ATTCTGAACATTGCAT 91
Query 89 GCCGGCAA--CTCAGCATAGAGCG-CACACCTTCAAGGTTTCACACCCTAAAGTACAAAG 145
||| | || | |||||||| || | |||| |||| ||||||| ||||| | ||||
Sbjct 92 GCC-GAAAGGGT-AGCATAGA-CGATAAACCTACAAGATTTCACAAACTAAACTTTAAAG 148
Query 146 ATCCTTTTTATATCATTGAGTTTGCGGATAATAATCAGCTACCTCATGGTGAAAAATGGT 205
|||||| |||| ||||||| || | ||||||| | | | ||| ||| ||||| ||||
Sbjct 149 ATCCTTCTTATGTCATTGAATTCGAGGATAAT--T-A--T-CCTAATGATGAAACTTGGT 202
Query 206 ATTGTCTGCTTAGTCACGGAACTAGACCAAAATATTGGTTTGATATTGAAGTATAT-GCT 264
||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| | |
Sbjct 203 ATTGTTTGCTTAGTCACGGAACTAGACCAAAATATTGGTATGATATTCAAGTATATCG-T 261
Query 265 CAAGCCTATT-ATCCTCGATGTGGTCAGCTACGCTCATGGATTGCTAGAAAGGATGGGAT 323
|||| | ||| | || |||| |||| | |||| ||||||||| |||| |||||| ||
Sbjct 262 CAAGGC-ATTCAACCAAAATGTAATCAGTTGCGCTTATGGATTGCAAGAATGGATGGAAT 320
Query 324 TTGGTTTACAAGAAGATATCATAGTCCGCCAGGGCATGTACTTGATTGGAAAATCCAGTA 383
||||||||||||||||||| | ||||| |||||||| |||||||||||||||||| ||||
Sbjct 321 TTGGTTTACAAGAAGATATGAAAGTCCACCAGGGCACGTACTTGATTGGAAAATCTAGTA 380
Query 384 A 384
|
Sbjct 381 A 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18096389640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5