BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337281
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51340.2 | Symbols: | MATE efflux family protein | chr1:190... 627 1e-178
> AT1G51340.2 | Symbols: | MATE efflux family protein | chr1:19031997-19034979
FORWARD LENGTH=1870
Length=1870
Score = 627 bits (339), Expect = 1e-178
Identities = 419/458 (91%), Gaps = 4/458 (1%)
Strand=Plus/Plus
Query 366 GAAAAGAATTATTCCATCAGCTTCATCTGCTTTGATCATTGGAGGCATTCTTGGCCTTCT 425
|||||||| || |||||||||||||||||||| |||||||||||| |||| |||||| |
Sbjct 504 GAAAAGAAACATACCATCAGCTTCATCTGCTTTAATCATTGGAGGCGTTCTCGGCCTTTT 563
Query 426 TCAAGCTATGTTTCTTATATCCTCAGGGAAACCTCTCTTGAGTTTCATGGGAGTTAAACA 485
|||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||
Sbjct 564 TCAAGCCGTGTTTCTTATATCCGCAGCCAAACCTCTCTTGAGTTTCATGGGAGTAAAACA 623
Query 486 CGATTCTCCAATGCTGAGACCTGCTCAGAGATATCTATCTTTAAGATCACTTGGCGCACC 545
||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 624 CGATTCTCCAATGATGAGACCTTCTCAGAGATATCTATCTTTAAGATCACTTGGTGCACC 683
Query 546 CGCTGTTCTTCTCTCACTCGCGGCACAAGGCGTTTTCCGCGGATTTAAAGACACCACAAC 605
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 684 AGCTGTTCTACTCTCACTTGCGGCACAAGGCGTTTTCCGCGGATTTAAAGACACGACAAC 743
Query 606 TCCATTATACGCAACTGTGATTGGAGATGCT-ACAAATATAATACTCGATCCAATATTCA 664
||| |||| ||| |||||||||||||||| | ||||| ||||||||||| || || ||||
Sbjct 744 TCCGTTATTCGCTACTGTGATTGGAGATG-TAACAAACATAATACTCGACCCGATTTTCA 802
Query 665 TATTCT-TTTTCGGTCTAGGCGTAACAGGAGCAGCCATTGCTCATGTTATATCCCAATAC 723
|||| | ||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 803 TATT-TGTTTTCCGCCTAGGCGTAACAGGAGCAGCCACTGCTCATGTTATATCCCAATAC 861
Query 724 CTTATGTGTGGAATACTTTTGTGGAAACTGATGGGTCAAGTTGATATCTTTAACATGAGT 783
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 862 CTTATGTGTGGAATACTCTTGTGGAAACTGATGGGTCAAGTTGATATCTTCAACATGAGT 921
Query 784 ACCAAACATCTTCAACTCTTTAGATTCATGAAAAATGG 821
|||||||||||||| ||| ||||||||||||||||||
Sbjct 922 ACCAAACATCTTCAGTTCTGTAGATTCATGAAAAATGG 959
Score = 566 bits (306), Expect = 2e-160
Identities = 376/408 (92%), Gaps = 12/408 (3%)
Strand=Plus/Plus
Query 826 GCAATACTAGCGAGCGCTTTTGCCAACAAAGACTACAAAAGAGCTGCAGCTACCGCTTCT 885
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1123 GCAATACTAGCGAGCGCGTTTGCCAAAAAAGACTACAAAAGAGCAGCAGCTACCGCCTCT 1182
Query 886 CGTGTACTGCAGTTGGGATTGGTTCTCGGGTTTCTACTCGCGGTTATACTTGGAGCAGGA 945
||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 1183 CGTGTACTGCAGTTGGGATTGGTTCTCGGTTTTGTACTTGCGGTTATACTTGGAGCAGGA 1242
Query 946 TTGCACTTTGGAGCAAGAGTATTTACGAAAGACGATAAAGTTTTACACCTTATTAGCATA 1005
||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 1243 TTGCATTTTGGAGCAAGAGTGTTTACAAAAGACGATAAAGTTTTACACCTAATTAGCATA 1302
Query 1006 GG----CC---T-T--C--CGACACAACCTATCAATGCCTTAGCGTTTGTGTTCGATGGA 1053
|| || | | | ||||||||| || |||||||||||||||||||||||||||
Sbjct 1303 GGACTTCCGTTTGTGGCAGGGACACAACCAATTAATGCCTTAGCGTTTGTGTTCGATGGA 1362
Query 1054 GTTAACTTTGGAGCATCCGATTTCGGTTACGCCGCAGCTTCATTAGTGATGGTGGCTATA 1113
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1363 GTTAACTTTGGAGCATCCGATTTCGGTTACGCCGCAGCTTCATTAGTAATGGTGGCTATA 1422
Query 1114 ATTAGCATCTTGTGCTTGCTCTTTCTCTCATCGACTCATGGTTTTATTGGACTTTGGTTT 1173
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1423 GTTAGCATCTTGTGTTTGCTCTTCCTCTCATCGACTCATGGTTTTATTGGACTTTGGTTT 1482
Query 1174 GGTCTCACCATTTACATGAGTCTCAGAGCAGGCGTTGGATTCTGGCGG 1221
||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1483 GGTCTCACCATTTACATGAGTCTTAGAGCAGCCGTTGGATTCTGGCGG 1530
Score = 261 bits (141), Expect = 1e-68
Identities = 177/194 (91%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 1 ATGTCTGAAAATGTCTACAACACAGATTTTCCAAGAAACCCTCTGTACATCTTT-TTTAG 59
||||||||| ||| |||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 28 ATGTCTGAAGATGGCTACAACACAGATTTTCCAAGAAACCCTCTATACAT-TTTCTTTAG 86
Query 60 TGATTTCAGGTCAGTTTTGAAATTTAATGAGCTCGGTTTGGAAATAGCGCGAATTAC-TT 118
||||||||| |||||| |||||||| ||||||||||||| || |||||||||||| | ||
Sbjct 87 TGATTTCAGATCAGTTCTGAAATTTGATGAGCTCGGTTTAGAGATAGCGCGAATTGCTTT 146
Query 119 ACCCTGCAGCACTTGCTCTAACCGCTGATCCTATTGCATCTCTAGTTGACACAGCCTTCA 178
|||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 147 ACCC-GCAGCACTTGCTTTAACAGCTGATCCTATTGCATCTCTAGTTGACACAGCCTTCA 205
Query 179 TAGGACAAATCGGT 192
|||| ||||| |||
Sbjct 206 TAGGCCAAATTGGT 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5