BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337325
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superf... 182 8e-45
AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superf... 171 2e-41
AT5G02980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 111 1e-23
> AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:16916072-16917184 FORWARD LENGTH=1113
Length=1113
Score = 182 bits (98), Expect = 8e-45
Identities = 416/561 (74%), Gaps = 55/561 (10%)
Strand=Plus/Plus
Query 404 AGATTTACATTATCGGAGGCTCCATG-TCCGATAATATTGACGATTGGGGAGAGGTTTAT 462
|||| ||| | || |||||||| | | ||| | ||||| || ||||||||||||||||||
Sbjct 497 AGATCTACGTGATTGGAGGCTCTA-GTTCCAACAATATCGAGGATTGGGGAGAGGTTTAT 555
Query 463 GACCCAAAGGCACAAACTTGGGAGCCAGTATTGCCCACAACACAAGATCTCACTAGT-CA 521
||||||||| | ||||||||||||||||||||||||||||||| |||||| ||| || ||
Sbjct 556 GACCCAAAGACCCAAACTTGGGAGCCAGTATTGCCCACAACACTAGATCTTACT-GTTCA 614
Query 522 AATGAGTTTGGTTCCAGGTAATAACTTGGTAATGGGTGGCAGAGTTTAT-AGCATGAATG 580
||||||| |||||||||||| |||||||||| |||| | ||||||| | ||||||||
Sbjct 615 AATGAGTGTGGTTCCAGGTAG---CTTGGTAATGAGTGGGAAAGTTTATGA-CATGAATG 670
Query 581 CTCACT-ACAGGCTTAGCTTTATAGaaaaaaaaTTTG-T-GATAAAGATAGACAACATGC 637
| | | || |||| |||| |||| || | |||| | | | ||||||| ||||||
Sbjct 671 G--ATTGA-AG-CTTAACTTTC-AGAAGAATA-TTTGCTTGGTGGAGATAGAGAACATGA 724
Query 638 CGTGT-ATAATAA-GGTTTCAGTTTGGGAAGTTTCTTTGGTGTGATCTAAAAGAAAGTTG 695
||| | || || ||||| | ||| ||| |||||||||| | | | ||| | |
Sbjct 725 TGTGCCA-AACAAAGGTTTGTGAAGGGGT-GTTAGTTTGGTGTGAACCAGAGGAA-GATC 781
Query 696 GCGG-TGGACTATGGTTAAGGGACTCCAAGGACTGCCCAA----C----TT-T---GAAT 742
| || ||| | |||| | ||||| ||||||| ||||| | || | | |
Sbjct 782 GTGGGTGGTGTCCGGTTGATGGACTTGAAGGACTTCCCAATAGGCCAACTTCTCCTGGTT 841
Query 743 ATATTAT-TCCGTG-----TTCCGACGGAAGAGGAAGAAGTGTGACAGTTTGGTGGAAGA 796
|| ||| || ||| ||||||| || | | |||||| || |||||||||||| ||
Sbjct 842 ATCTTACCTCGGTGGCACATTCCGACCGA-G-G-AAGAAGAGTAACAGTTTGGTGGGAGT 898
Query 797 CAAAGGTGTATCCATC-TGAAGGTCCTAATTGGTTTAGGGTA-GCTATAAC-GAATATTT 853
| |||| | |||| | |||||| || ||| || || | | || ||| || ||||
Sbjct 899 CGGCTGTGT-TACATCGTCTAGGTCCCAAATGGACTAAGGAATG-TAAAACAGAG-ATTT 955
Query 854 GGTGTGCAGAAATTTCGTTTAAAAGACGC--TGTTCAGGAATGCTTTGGGGATTTGTTGA 911
|||||||||| ||||||||| | |||||| |||| |||| | |||| |||||||||||
Sbjct 956 GGTGTGCAGAGATTTCGTTTGAGAGACGCGGTGTT--GGAAAGGTTTGTGGATTTGTTGA 1013
Query 912 GTGGTCTAAGATTGTGTTTAC 932
|||||||||| ||| |||||
Sbjct 1014 ATGGTCTAAGAATGTCTTTAC 1034
> AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:703268-704437 FORWARD LENGTH=1065
Length=1065
Score = 171 bits (92), Expect = 2e-41
Identities = 241/309 (78%), Gaps = 26/309 (8%)
Strand=Plus/Plus
Query 138 TCTCAATTGTTTGGCTCGTGTCTCGAGATTCTA---TCAATG---GTC-T----C--CAA 184
||||||||||||||||||||||||||||||||| || || ||| | | |||
Sbjct 144 TCTCAATTGTTTGGCTCGTGTCTCGAGATTCTACCGTCCATCTCTGTCCTTGGTCAACAA 203
Query 185 G-A-TTCCGATCTCTCATGGCTTCCCCTGATCTCGAGGCAACAAGAACTTGCATGGGAAT 242
| | |||| ||||||||| ||||| |||||||||||||| || | | |||| ||| |
Sbjct 204 GGAATTCCAATCTCTCATCGCTTCTCCTGATCTCGAGGCCACGCGCTCCCGCATAGGAGT 263
Query 243 AACAGAGAATTACCTAGT-TGTCTGCTTAGAC-CGTGGTAAGCATAAAGATAGTTGTCGC 300
|||||||||| |||| | ||||||||| || || |||| | || || | ||||
Sbjct 264 AACAGAGAATCACCTC-TATGTCTGCTTGGAGTCGAA-TAAGAACAACCCTAATCCTCGC 321
Query 301 TGGTTCACACTTGCACCAATTCACAAACAAGAGAA-GTTA--CTTCCCATCCCTTCGTTT 357
|||||||||||||||||||||| |||| || |||| || | | | |||||||||||||
Sbjct 322 TGGTTCACACTTGCACCAATTCCCAAAGAACAGAAAGTGAAACCTATCATCCCTTCGTTT 381
Query 358 CCTTATCTAA-ATCCAAAAT-ACTCAACTGTTGTCTCAATGGGTTCAGAGATTTACATTA 415
||||||| || |||| | || | |||||| ||||||| || || |||||||||||||| |
Sbjct 382 CCTTATC-AACATCCCACATCA-TCAACTTTTGTCTCTATTGGCTCAGAGATTTACATCA 439
Query 416 TCGGAGGCT 424
|||||||||
Sbjct 440 TCGGAGGCT 448
> AT5G02980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:697993-699000 FORWARD LENGTH=1008
Length=1008
Score = 111 bits (60), Expect = 1e-23
Identities = 275/372 (74%), Gaps = 41/372 (11%)
Strand=Plus/Plus
Query 77 AATCACCAGAGTCTCCTCCTCAGACTCCGACG-ACGTTTTCTTCGTTGCCGTATGACCTC 135
||||| ||||||||||||||| || | || |||||||||||||| || || ||| ||
Sbjct 8 AATCATCAGAGTCTCCTCCTC---CTTC-TCGTACGTTTTCTTCGTTACCATACGACATC 63
Query 136 GCT-CTCAATTGTTTGGCTCGTGTCTCGAGATTCTAT--C--AA-TG--------GTCTC 181
| |||||||||||||||||||||||||||| | || | || | |||||
Sbjct 64 -ATACTCAATTGTTTGGCTCGTGTCTCGAGATACCATTACCCAACTCTATCTCTCGTCTC 122
Query 182 CAAG-A-TTCCGATCTCTCATGGCTTCCCCTGATCTCGAGGCAACAAGAACTTGCATGGG 239
|||| | |||| ||||||||| || |||| ||| ||| | || ||| || | |||| ||
Sbjct 123 CAAGGAGTTCCAATCTCTCATCGCCTCCCGTGAGCTCTACGCTACACGATCCCGCATCGG 182
Query 240 AATAACAGAGAA-TTAC-CTAGTTGTCTGCTTAGACCGTGG-TAAGCATAAAGA-TA-GT 294
|| ||| |||| || | ||| | |||||||| ||| || |||| | || || ||
Sbjct 183 AAAAACCGAGAGGTTCCTCTA-TA-TCTGCTTAAACC-TGACTAAG-AGCAACCCTAAGT 238
Query 295 TGTCGCTGGTTCACACTTGCACCAATTCACAAAC-AAGAGAAGTTACTTCCCATCCCTTC 353
|||||||||||||||| | ||| ||| ||| | || | || |||| ||| ||||||
Sbjct 239 A-TCGCTGGTTCACACTTCCCCCAGTTCCCAA-CGAACAAAAACTACTACCCGTCCCTTT 296
Query 354 GTTTCCTTATCTAAATCCAAAATACTCAACTGTTGTC-TCAA-TGGGTTCAGAGATTTAC 411
|||| |||||| | || || | |||||| || || |||| || |||||||||||||
Sbjct 297 GTTTACTTATC-ATCTC-AAT-TCCTCAACCGTC-TCCTCAACTGA-TTCAGAGATTTAC 351
Query 412 ATTATCGGAGGC 423
|| |||||||||
Sbjct 352 ATAATCGGAGGC 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5