BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337332
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51770.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1818 0.0
AT3G21310.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 905 0.0
> AT1G51770.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:19201789-19203224
FORWARD LENGTH=1351
Length=1351
Score = 1818 bits (984), Expect = 0.0
Identities = 1136/1212 (94%), Gaps = 0/1212 (0%)
Strand=Plus/Plus
Query 1 ATGGTAATGGAGATGGAGGAAGGTCTTAAAGAAAATGCTGCATCAACCCCTAAATCGAGA 60
||||||||||||||||||||| || |||||||||||| | ||||||| |||||||| |||
Sbjct 140 ATGGTAATGGAGATGGAGGAATGTGTTAAAGAAAATGGTTCATCAACACCTAAATCTAGA 199
Query 61 GTCACAAACCAAACTAGAGCTCTTTTATCAATGCGTCTGCTTCAGATTTTGTTATTGTTT 120
|||||||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||
Sbjct 200 GTCACAAACCAATCTAGAGCTCTCTTACCGTTGCGTCTGCTTCAGATTCTGTTATTGTTT 259
Query 121 CTTGTTTTGACTCTTGGGATCTCTGTTGTTGGTATACACATGATCAAGTTCTTAAAGATT 180
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 260 CTTGTTTTGACTCTTGGGATCTCTGTTGTTAGTATACACATGATCAAGTTTTTGAAGATT 319
Query 181 CAACATTTGGATCTTGTGGTTCCAACCACTGTGCTCTCTATGTATGACCATGAGACTGTT 240
|||| ||| |||| ||||| ||||| ||| ||||||||| |||| | ||||||| ||||
Sbjct 320 CAACGTTTAGATCCTGTGGCTCCAATTACTTTGCTCTCTACGTATAATCATGAGAGTGTT 379
Query 241 AGTTTAGATAGCTTTATTAGACCTCCTTCCAATGTTTGGCACTCAATGAATGACACTGAA 300
| |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 380 ACTTTAGATAGCTTTATTAGACCTCCTTCCAATGTTTGGCACACAATGAATGATAGTGAA 439
Query 301 TTGCTTTGGCGTGCTTCGATAGAGCCGCAGAGAAATGGGTATCCGTTTAAACGAGTACCT 360
||||||||||||||||| ||||||||||| |||||||| |||||||||| ||| || |||
Sbjct 440 TTGCTTTGGCGTGCTTCTATAGAGCCGCAAAGAAATGGTTATCCGTTTAGACGTGTCCCT 499
Query 361 AAACTGGCTTTCATGTTTCTTGCCAAAGGTCCTTTACCATTTGCTCCACTCTGGGAGAAG 420
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 500 AAATTGGCTTTCATGTTTCTTGCCAAAGGTCCTTTACCATTTGCTCCACTTTGGGAGAAG 559
Query 421 TTCTTTAAGGGAAATGAGGGTCTTTACTCTATCTATGTTCATTCATTGCCTAATTACAAA 480
|||| ||| ||| ||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 560 TTCTGTAAAGGACATGAGGGTCTTTATTCTATCTATGTTCATTCGTTGCCTAGTTACAAA 619
Query 481 TCAGATTTTTCGAGGTCATCTGTGTTTTACAGAAGATATATCCCTAGTCAGGCTGTGGCA 540
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TCGGATTTTTCGAGGTCGTCTGTGTTTTACAGAAGATATATCCCTAGTCAGGCTGTGGCA 679
Query 541 TGGGGAGAGATGAGTATGGGTGAAGCTGAGAGGAGGCTTTTGGCTAACGCGTTGCTCGAT 600
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 680 TGGGGAGAGATGAGTATGGGTGAAGCAGAGAGGAGGCTTTTGGCTAATGCGTTGCTTGAT 739
Query 601 ATCTCTAATGAATGGTTTGTTCTGCTGTCTGAGTCATGCATTCCTCTGCGCGGTTTCAGC 660
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 740 ATCTCTAATGAATGGTTTGTTCTGCTGTCTGAATCATGCATTCCTCTGCGAGGTTTCAGC 799
Query 661 TTTATCTATAGTTATGTCTCTGAATCAAAATATAGTTTCATGGGTGCTGCTGATGAGGAA 720
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 800 TTTATCTATAGTTATGTCTCTGAATCAAGATATAGTTTTATGGGTGCTGCTGATGAGGAA 859
Query 721 GGACCTGATGGAAGAGGCAGATACAGGACTGAAATGGAACCTGAGATCACACTAAGCCAG 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 860 GGACCTGATGGAAGAGGCAGATACAGGACAGAAATGGAACCTGAGATCACACTAAGCCAG 919
Query 781 TGGCGGAAAGGGTCTCAGTGGTTTGAAATTAACCGGAAACTCGCTGTTGAGATTGTTCAA 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TGGCGAAAAGGGTCTCAGTGGTTTGAAATTAACCGGAAACTCGCTGTTGAGATTGTTCAA 979
Query 841 GATACTACTTACTATCCCAAATTCAAAGAGTTTTGTAGACCTCCATGTTATGTTGATGAA 900
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 980 GACACTACTTACTATCCCAAATTCAAAGAGTTTTGTAGACCTCCATGCTATGTAGATGAA 1039
Query 901 CATTACTTCCCGACAATGCTGTCTATGAAACATCGTCTTTTGCTGGCTAATCGGACATTG 960
||||||||||| |||||| |||||||||||||||| ||||||| |||||| ||||||||
Sbjct 1040 CATTACTTCCCAACAATGTTGTCTATGAAACATCGGGTTTTGCTTGCTAATAGGACATTG 1099
Query 961 ACATGGACAGATTGGTCACGTGGTGGTGCTCATCCAGCTACTTTTGGTAAGGCTGATATA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1100 ACATGGACAGATTGGTCACGTGGTGGTGCTCATCCAGCTACTTTTGGTAAGGCTGATGTA 1159
Query 1021 ACGGAAAGTTTTCTCAAGAAGCTTCCGGGAGCCAAATCCTGCCTCTACAATGATCAGCAG 1080
|||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||
Sbjct 1160 ACGGAAAGTTTTCTCAAGAAGCTTACAGGAGCCAAATCTTGCCTCTACAATGATCATCAG 1219
Query 1081 TCTCAAATCTGTTATCTATTTGCGAGAAAGTTTGCTCCAAGCGCATTGGAGCCCTTACTG 1140
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1220 TCTCAAATCTGTTATCTCTTTGCCAGAAAGTTTGCTCCAAGCGCATTGGAGCCTTTACTG 1279
Query 1141 CAACTTGCACCCAAGATTCTTGATTTGGGTTCTAACATATCTTCCACTCGTCACTCTTGG 1200
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1280 CAACTTGCACCCAAGATTCTTGAGTTAGGCTCTAACATATCTTCCACTCGTCACTCTTGG 1339
Query 1201 TTTTTGTTTTGA 1212
| ||||||||||
Sbjct 1340 TATTTGTTTTGA 1351
> AT3G21310.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr3:7497290-7499152
FORWARD LENGTH=1584
Length=1584
Score = 905 bits (490), Expect = 0.0
Identities = 963/1183 (81%), Gaps = 66/1183 (6%)
Strand=Plus/Plus
Query 7 ATGGAGATGGAGGAAGGTCTTAAAGAAAATGCTGCATCAAC-CCCTAAATCGAGAGTC-A 64
|||| |||||||||||| ||||||| |||||||||||| | ||| || || ||| | |
Sbjct 292 ATGGGGATGGAGGAAGGGATTAAAGATAATGCTGCATCAGCTCCC-AATTCAAGA-CCTA 349
Query 65 CAAACCAAAC-TAGAGCTCTTTTATCAATGCGTCTGCTTC-AGATTTTGTTATTGTTTC- 121
|||||| ||| || |||||||||| | ||||| |||||| || |||| || ||| |||
Sbjct 350 CAAACC-AACTTAAAGCTCTTTTACCGATGCGGGTGCTTCAAG-TTTTCTTGTTG-TTCT 406
Query 122 TTGTTTTGACTCTTGGGATCTCTGTTGTTGGTATACACATGATCAAGTTCTTAAAGATTC 181
|||||||| |||||| ||||| || || |||| ||||||||||||| |||||||||||
Sbjct 407 TTGTTTTGGTTCTTGGAATCTCAGTCATTAGTATGCACATGATCAAGTACTTAAAGATTC 466
Query 182 AACATTTGGATCTTGTGGTTCCAACCAC-TGTGCTCTCTA-TGTATGACCATGAGACTGT 239
| | | ||| | | |||| | || | || |||||| | |||| |||||| |
Sbjct 467 -A-A-----A-CTT-TAGCTCCATCGACAT-TGATCTCTACT-TATG---ATGAGAGAAT 512
Query 240 TA-GTTTAGATAGCTTTAT-TAGACCTCC-TTCCAATGTTTGGCACTCAATGAATGACAC 296
|| | ||||| ||| |||| || ||||| || |||| |||||| || ||||||||||
Sbjct 513 TACG-TTAGAGAGCCTTATCAAG-CCTCCATT-GAATGGTTGGCATTCCATGAATGACAG 569
Query 297 TGA-ATTGCTTTGGCGTGCTTCGATAGAGCCGCAGAGAAATGGGTATCCGTTTAAACGAG 355
||| || ||||||||||||||||| ||||| | || | || ||||| |||||| |||
Sbjct 570 TGAGCTT-CTTTGGCGTGCTTCGATGGAGCCTCGGATACTTGACTATCCATTTAAAAGAG 628
Query 356 TACCTAAACTGGCTTTCATGTTTCTTGCCAAAGGTCCTTTACCATTTGCTCCACTCTGGG 415
| |||||| |||| ||||||||||| ||||||| ||||| |||||||||||||| ||||
Sbjct 629 TTCCTAAAATGGCATTCATGTTTCTCACCAAAGGACCTTTGCCATTTGCTCCACTTTGGG 688
Query 416 AGAA-GTTCTTT--AAGGGAAATGAGGGTC-TTTACTCTATCTATGTTCATTCATTGCCT 471
| || ||| ||| ||||| ||||||| | ||||||| |||||||||||| | |||||
Sbjct 689 A-AAGGTT-TTTCAAAGGG-CATGAGGG-CTTTTACTCAATCTATGTTCATACTTTGCCA 744
Query 472 AATTACAAATCAGATTTTTCGAGGTCATCTGTGTTTTACAGAAGATATATCCCTAGTCAG 531
||||| | ||||||||| | || ||||||||||||||||||||| | ||||| |||||
Sbjct 745 AATTATAGATCAGATTTCCCAAGCTCATCTGTGTTTTACAGAAGACAGATCCCAAGTCA- 803
Query 532 GC-TGTGGCATGGGGAGAGATGAGTATGGGTGAAGCTGAGAGGAGGCTTTTGGCTAACGC 590
|| ||| || |||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 804 GCATGTAGCTTGGGGAGAGATGAGTATGTGTGATGCTGAAAGGAGGCTTTTGGCTAACGC 863
Query 591 GTTGCTCGATATCTCTAATGAATGGTTTGTTCTGCTGTCTGA-GTCATGCATTCCTCTGC 649
|||||||||||||||||| |||||||||||| | || ||||| | | || |||||||| |
Sbjct 864 GTTGCTCGATATCTCTAACGAATGGTTTGTTTTACTATCTGAAG-CGTGTATTCCTCTTC 922
Query 650 GCGGTTTCAGCTTTATCTATAGTTATGTCTCT-GAATCAAAATATAGTTTCATGGGTGCT 708
||||||||| |||| |||| ||||||||||| || |||| |||||||||||||||| ||
Sbjct 923 GCGGTTTCAACTTTGTCTACCGTTATGTCTCTAGA-TCAAGATATAGTTTCATGGGTTCT 981
Query 709 GCTGATGAGGAAGGACCTGATGGAAGAGGCAGATACAGG-ACTGAAATGGAACCTGA-GA 766
| ||| ||||| || ||| | || ||||||||||| || | || ||||| ||| || |
Sbjct 982 GTTGACGAGGACGGGCCTTACGGGAGAGGCAGATATAGCTA-TGCAATGGGACCAGAAG- 1039
Query 767 TCACACTAAGCCAGTGGCGGAAAGGGTCTCAGTGGTTTGAAATTAACCG-GAAACTCGCT 825
| | |||| | ||||| | ||||||||||||||||||||||| ||| | | | || |||
Sbjct 1040 TAAGTCTAAACGAGTGGAGAAAAGGGTCTCAGTGGTTTGAAATAAACAGAGCA-CTTGCT 1098
Query 826 GTTGAGATTGTTCAAGATACTACTT-ACTATCCCAAATTCAAAGAGTTTTGTAGACCTCC 884
||||| |||||| |||| | | || ||||| |||||||||||||||||||||||||||
Sbjct 1099 GTTGATATTGTTGAAGACA-TGGTTTACTATAACAAATTCAAAGAGTTTTGTAGACCTCC 1157
Query 885 ATGTTATGTTGATGAACATTACTTCCCGACAATGCTGTCTAT-GAAACATC-GTCTTTTG 942
|||||||| ||||||||||||||||| |||||||| ||||| | | ||| | ||||
Sbjct 1158 TTGTTATGTAGATGAACATTACTTCCCAACAATGCTCTCTATTGGAT-ATCCGGATTTT- 1215
Query 943 CTGGCTAATCGGACATTGACATGGACAGATTGGTCACGTGGTGGTGCTCATCCAGCTACT 1002
|| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 1216 CTCGCTAATCGGACATTGACTTGGACAGATTGGTCAAGGGGTGGTGCTCATCCAGCTACT 1275
Query 1003 TTTGGTAAGGCTGATATAACGGA-AAGTTTTCTCAAGAAGCT-TCCGGGAGCCAAATCCT 1060
||||| |||||||||||||| || ||||| |||||||||| || | || ||| | |
Sbjct 1276 TTTGGCAAGGCTGATATAACAGAGAAGTTCA-TCAAGAAGCTGTCAAG-AGGTAAAGCTT 1333
Query 1061 GCCTCTACAATGATCAGC-AGTCTCAAATCTGTTATCTATTTGCGAGAAAGTTTGCTCCA 1119
|| ||||||||||||||| | |||||| | |||||||| ||||| |||||||||||||||
Sbjct 1334 GCTTCTACAATGATCAGCCA-TCTCAAGTTTGTTATCTTTTTGCAAGAAAGTTTGCTCCA 1392
Query 1120 AGCGCATTGGAGCCCTTACTGCAACTTGCACCCAAGATTCTTG 1162
||||||||| |||| ||||| |||||||||| ||| ||||||
Sbjct 1393 AGCGCATTGAAGCCTTTACTTAAACTTGCACCAAAGGTTCTTG 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5