BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337334
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51790.1 | Symbols: | Leucine-rich repeat protein kinase fa... 479 2e-134
> AT1G51790.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:19206711-19211417 REVERSE LENGTH=2960
Length=2960
Score = 479 bits (259), Expect = 2e-134
Identities = 330/363 (91%), Gaps = 10/363 (3%)
Strand=Plus/Plus
Query 1 ATGAGAACTGGAATTGTACCAGATAATCCAAGAGGGTTTGTAGATTTTGGATGGATTCCA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 915 ATGAGAACTGGAATTGTACCAGATAATCCAAGAGGATTTGTAGATTTTGGATGGATTCCA 974
Query 61 GATGATCCGTCTCTCGAGTTTTTCGTTTACTTGTATTTCACGGAACTTCAACAACCGAGT 120
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 975 GATGATCCGTCTCTTGAGTTTTTCTTTTACTTGTATTTCACGGAACTTCAACAACCTAAT 1034
Query 121 TCC--AATTCCGCGGATACAAGAGAATTCGTAATCTTGTTGAAC-GGAGAGGCTTTTGGG 177
||| || ||| || |||||||||||||| |||||||||||| ||| || ||||||||
Sbjct 1035 TCCGGAA--CCGTAGAAACAAGAGAATTCGTGATCTTGTTGAACGGGA-AGTCTTTTGGG 1091
Query 178 GGACCGCTT-AGTCTTAATTACTTCCAGACCTTAGCCCTGATCACTCCAAACCCTTTGAA 236
| |||| || |||||||| ||||||| |||||||||| || ||||| |||||||||||||
Sbjct 1092 GAACCG-TTAAGTCTTAACTACTTCCGGACCTTAGCCTTGTTCACTTCAAACCCTTTGAA 1150
Query 237 AGCACAGAGCTTCCAGTTTTCTCTTCGTCAGACTCAGAGTTCATCTCTTCCACCTCTGAT 296
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 AGCAGAGAGCTTCCAGTTTTCTCTTCGTCAGACTCAGAGTTCATCTCTTCCACCTCTGAT 1210
Query 297 CAATGCGATGGAGACTTACTTTACTAA-CAAACTTCCGCAATCATCGACCGATCAAAACG 355
|||||| ||||||||||||||| ||| ||||||||| |||||||| || |||| |||||
Sbjct 1211 CAATGCTATGGAGACTTACTTTG-TAAACAAACTTCCACAATCATCAACGGATCCAAACG 1269
Query 356 ACC 358
|||
Sbjct 1270 ACC 1272
Score = 351 bits (190), Expect = 4e-96
Identities = 241/264 (91%), Gaps = 9/264 (3%)
Strand=Plus/Plus
Query 415 AACTTGTCATCCGCCGGATTGACAGGAGAGATAACGTCTGATATATCGCGGCTTTCACAG 474
||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1413 AACTTATCGTCCGCCGGATTGACTGGAGAGATAACGTCTGATATATCGCGTCTTTCGCAG 1472
Query 475 TTGCAAATTCTGGACTTATCAAATAACAATTTGACTGGACC---AGTACCAGCTTTCTTA 531
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1473 TTGCAAATTCTGGACTTATCAAATAACAATTTGAGTGGACCTGCAGTACCAGCTTTCTTA 1532
Query 532 GCTCAACTCCAATTCCTGAGAGTCTTACATTTGGCGAACAACCAGCTTAGTGGTCCTCTA 591
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1533 GCGCAACTCCAATTCCTGAGAGTCCTACATTTGGCGAACAACCAGCTTAGTGGTCCTATA 1592
Query 592 CCATCTAGTCTCATAGAGAGGCTAGAGTCGTTTAGTATCAATGGGAATCCAAGTATTTGT 651
|| ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 1593 CCCTCTAGTCTCATAGAGAGACTAGACTCGTTTAGT------GGGAATCCAAGTATTTGT 1646
Query 652 TCTACAAATGCTTGTGAAGAGGTC 675
||| ||||||| ||||||||||||
Sbjct 1647 TCTGCAAATGCGTGTGAAGAGGTC 1670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5