BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg337336

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51800.1 | Symbols:  | Leucine-rich repeat protein kinase fa...   673    0.0  


> AT1G51800.1 | Symbols:  | Leucine-rich repeat protein kinase 
family protein | chr1:19214148-19217970 FORWARD LENGTH=2877
Length=2877

 Score =  673 bits (364),  Expect = 0.0
 Identities = 401/419 (96%), Gaps = 1/419 (0%)
 Strand=Plus/Plus

Query  139   TGGAATCTGTCTGCAACTGGCTTGACCGGAGAGATATTAGAATTAATATCAGACCTTACC  198
             ||| |||||||| ||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct  1293  TGG-ATCTGTCTACAAGTGGCTTGACCGGAGAGATCTTAGAATTTATATCAGACCTTACC  1351

Query  199   AGTTTAGAAGTTCTTGACTTGTCTAACAATTCTTTAACTGGTTCAGTCCCAGAGTTTCTA  258
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1352  AGTTTAGAAGTTCTTGACTTGTCTAACAATTCTTTAACTGGTTCAGTCCCAGAGTTTCTA  1411

Query  259   GCAAACATGGAAACCTTAAAACTCATAAATCTATCAGGAAATGAGCTAAATGGCTCAATC  318
             || || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  1412  GCTAATATGGAAACCTTAAAACTCATAAATCTATCTGGAAATGAGCTAAATGGCTCTATC  1471

Query  319   CCTGCAACTCTCCTTGATAAAGAACGAAGAGGATCGATTACGTTAAGTACCGAAGGAAAT  378
             ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||
Sbjct  1472  CCTGCAACTCTCCTTGATAAAGAACGACGAGGATCTATTACGTTAAGTATCGAAGGAAAT  1531

Query  379   GCCGGGCTCTGTTCATCTGCATCATGTGCTACCACGAAAAAGAAGAAGAAAAACACTGTT  438
              ||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct  1532  ACCGGGCTTTGTTCATCTACATCATGCGCTACCACGAAAAAGAAGAAGAAAAACACTGTT  1591

Query  439   ATTGCACCTGTTGCAGCATCACTTGTTTCAGTCTTCCTCATTGGAGCTGGAATCGTTACT  498
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1592  ATTGCACCTGTTGCAGCATCACTTGTTTCAGTATTCCTCATTGGAGCTGGAATCGTTACT  1651

Query  499   TTCCTTATCCTCAAGAGGAAGAAGAGATCCAAGCTTGGTTTGAATCCTAATTCAGGAAC  557
             ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1652  TTCCTTATCCTCAAGAGGAAGAAGAGAACCAAGCTTGGTTTGAATCCTAATTCAGGAAC  1710


 Score =  250 bits (135),  Expect = 1e-65
 Identities = 139/141 (99%), Gaps = 0/141 (0%)
 Strand=Plus/Plus

Query  1    ATGAACACAACTTACTTGACTCGACAAGGGTCCTTGCAGACCTTCATCAGAGCAGACGTT  60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  587  ATGAACACAACTTACTTGACTCGACAAGGTTCCTTGCAGACCTTCATCAGAGCAGACGTT  646

Query  61   GGCGCGACTGTTAACCAAGGCTACAGGTACGGAATCGATGTGTTTGATCGTGTCTGGACT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  647  GGCGCGACTGTTAACCAAGGCTACAGGTACGGAATCGATGTGTTTGATCGTGTCTGGACT  706

Query  121  CCGTATAATTTCGGGAACTGG  141
            |||||||||||||| ||||||
Sbjct  707  CCGTATAATTTCGGAAACTGG  727



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30994468699


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5