BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337374
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02180.1 | Symbols: TOM3 | tobamovirus multiplication protei... 647 0.0
AT1G52211.1 | Symbols: | Pseudogene of AT2G02180; TOM3 (tobamo... 283 1e-75
> AT2G02180.1 | Symbols: TOM3 | tobamovirus multiplication protein
3 | chr2:560864-563233 FORWARD LENGTH=1296
Length=1296
Score = 647 bits (350), Expect = 0.0
Identities = 495/562 (88%), Gaps = 21/562 (4%)
Strand=Plus/Plus
Query 2 TGCAACATATCTTGCTTGATATTCCAAGTCTTGGTTTCTTCACAACCTATGCTGTTCTGA 61
||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 456 TGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGG 515
Query 62 TTCTCTTCTGGGCAATGA--TTCACTATCAGGCGCGTGC-GATATCCACCGATGGACTAA 118
|||| |||||||| ||| || | |||||||||||||| | |||| || |||||||| |
Sbjct 516 TTCTTTTCTGGGC--TGAAATTTATTATCAGGCGCGTGCAG-TATCGACTGATGGACTCA 572
Query 119 AGCCAAGCTTCTTCACAATTAATGCAATTGTATATGTAGTTCAGATAT-CTCTTTGGTTG 177
||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||
Sbjct 573 GGCCAAGCTTCTTCACAATTAATGCAGTTGTATATGTAGTTCAGAT-TGCTCTATGGTTG 631
Query 178 GTTTTGTGGTGGAACCCTATTCGAGTTATGGTAATCCTATTCCTATCTAAGATGTTCTTA 237
|||||||||||||| ||| ||||||||||||||||||||| | || | |||||||||
Sbjct 632 GTTTTGTGGTGGAAGCCTGTTCGAGTTATGGTAATCCTAT-C-TA---A-GATGTTCTTT 685
Query 238 GCAGGTGTTTCATTGTTCG-TCGCCCTTGGATTTTTACTTTACGGTGGAAGGCTTTTGCT 296
||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||
Sbjct 686 GCAGGTGTTTCATTGTTCGCT-GCCCTTGGATTTTTACTTTATGGTGGAAGGCTTTTCCT 744
Query 297 AATGTTGCATCGCTTTCCAGTAGAATCTAAAGGGCGTAGAAAAAAGATGAAAGAGGTTGG 356
||||||||| || ||||||||||||||||||||||| | |||||| || ||||||||||
Sbjct 745 AATGTTGCAACGGTTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGG 804
Query 357 TTGTGTGACAACAATATGCTTTACGGGTTTCCTCATCCGATGTATCATGATGTGCTTTGC 416
|| |||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 805 TTACGTGACAACCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGC 864
Query 417 TGCTTTCTACGAGGGCGCAAACCTTGATGTGATGGATCATCCCATCCTTAATCT-CATAT 475
||||||| | ||||| ||||||||||||||| | ||||| ||||||||||| || |||||
Sbjct 865 TGCTTTCGATGAGGGGGCAAACCTTGATGTGTTAGATCACCCCATCCTTAA-CTTCATAT 923
Query 476 ATTACTTGTTGGTAGAGATATTGCCGTTTTCTCTCGTTCTGTTCATCTTGAGAACCCTAC 535
||||| |||||||||||||||| || | ||||| || || ||||||||||||| ||||
Sbjct 924 ATTACCTGTTGGTAGAGATATTACCCTCCTCTCTGGTCCTCTTCATCTTGAGAAAGCTAC 983
Query 536 CACCAAAACGA--CATGTACAC 555
||||||||||| ||| |||||
Sbjct 984 CACCAAAACGAGGCAT-TACAC 1004
> AT1G52211.1 | Symbols: | Pseudogene of AT2G02180; TOM3 (tobamovirus
multiplication protein 3) | chr1:19450845-19452032 REVERSE
LENGTH=469
Length=469
Score = 283 bits (153), Expect = 1e-75
Identities = 217/246 (88%), Gaps = 12/246 (5%)
Strand=Plus/Plus
Query 1 ATGCAACATATCTTGCTTGATATTCCAAGTCTTGGTTTCTTCACAACCTATGCTGTTCTG 60
|||||||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||
Sbjct 4 ATGCAACATATCTTGCTTGATATTCCTAGTCTTGCTTTCTTCACAACCTATACTGCTCTG 63
Query 61 ATTCTCTTCTGGGCAATG-ATTCACTATCAGGCGCGTGC-GATATCCACCGATGGACTAA 118
|||||||||||||| | | ||| || ||||||||||||| || |||||| ||||||||||
Sbjct 64 ATTCTCTTCTGGGC-AGGAATTTACCATCAGGCGCGTGCAGA-ATCCACTGATGGACTAA 121
Query 119 AGCCAAGCTTCTTCACAATTAATGCAATTGTATATGTAGTTCAGATATCTCTTTGGTTGG 178
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TGTCAATCTTCTTCACAATTAATGCAATTGTATATGTAGTTCAGATATCTCTTTGGTTGC 181
Query 179 TTTTG-TGGTGGAACCCTATTCGAGTTATGGTAATCCTATTCCTATCTAAGATGTTCTTA 237
||| | || ||||| ||| || |||||||| |||| | | |||||||||||||||||
Sbjct 182 TTTGGATG-TGGAAGCCTGTTGGAGTTATGCTAAT--T---C-TATCTAAGATGTTCTTA 234
Query 238 GCAGGT 243
||||||
Sbjct 235 GCAGGT 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5