BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337379
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl... 2641 0.0
AT3G16130.1 | Symbols: ATROPGEF13, ROPGEF13, PIRF2 | RHO guanyl... 758 0.0
> AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-nucleotide
exchange factor 11 | chr1:19455766-19459574 REVERSE
LENGTH=2046
Length=2046
Score = 2641 bits (1430), Expect = 0.0
Identities = 1533/1583 (97%), Gaps = 6/1583 (0%)
Strand=Plus/Plus
Query 41 ATTTCAA-G--AACATGAACGAGAACTCAGCTTCAAGACATATTAAAAGTTGGAGCTCAG 97
||||||| | ||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 464 ATTTCAATGATAACATGAACGAAAACTCAGCTTCAAGACATGTTAAAAGCTGGAGCTCAG 523
Query 98 ATTGTGCAATGAGAATGGATGGTTCAGACAATTT-G--GATGATGATAATGACATGATGA 154
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 524 ATTGTGCAATGAGAATGGATGGTTCTGACAATTTGGATGATGATGATAATGACATGATGA 583
Query 155 TGTTTAGGAGTCAACCGGGCAAATTTGGCAGCGTTGACCGACCTTCTTTGCCTCTAGGCG 214
|||||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||
Sbjct 584 TGTTTAGGAGTCAACCCGGAAAATGTGGCAGCGTTGACCGACCTTCTTTGCCTATAGGCG 643
Query 215 GAGTAACACCTAACCGCAACGACAAGCTTCCGAGAGTCGCTTCATCGGAATCCATGGAGG 274
||||||| ||||| ||||| |||||||||||||||||| |||||||||| ||||||||||
Sbjct 644 GAGTAACGCCTAATCGCAATGACAAGCTTCCGAGAGTCTCTTCATCGGATTCCATGGAGG 703
Query 275 CACTATTAGTATTACAAGCAGCAATGGAGCAAATGAAAGAGAAATTTTCGAAATTGCTTC 334
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 CACTAATAATATTGCAAGCAGCAATGGAGCAAATGAAAGAGAAATTTTCGAAATTGCTTC 763
Query 335 TTGGAGAAGATATGTCAGGAGGAGGAAAAGGTGTTTCATCGGCTTTGGCTTTATCTAACG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TTGGAGAAGATATGTCAGGAGGAGGAAAAGGTGTTTCATCGGCTTTGGCTTTATCTAACG 823
Query 395 CCATTACCAACCTCGCAGCTTCTGCATTTGGAGAACAACGGCGTTTAGAGCCAATGGCGG 454
|||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 824 CCATTACCAATCTCGCAGCGTCTGCGTTTGGAGAACAACGGCGTTTAGAGCCAATGGCGG 883
Query 455 CGGATAGAAAAACGCGTTGGAGGAGAGAAATTGGATGGCTTATCTCTGTGGCTGATCATA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 884 TGGATAGAAAAACGCGTTGGAGGAGAGAAATTGGATGGCTTATCTCTGTGGCTGATTATA 943
Query 515 TAGTTGAATTCGCTCCAACACAACAAACAAACAAAGATGGTACTTCAATGGAAGTCATGT 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TAGTTGAATTCGCTCCAACACAACAAACAAACAAAGATGGTACTTCAATGGAAGTCATGT 1003
Query 575 CAACAAGACAAAGAACAGATCTTCTCTGTAACATCCCTGCACTTAAGAAACTCGATGCTA 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CAACAAGACAAAGAACAGATCTTCTCTGTAACATCCCTGCACTTAAGAAACTCGATGCTA 1063
Query 635 TGCTTCTCGATTGTCTTGATAAATTCAAGGATCAGGATGAGTTTTATTATGTCAAAAAAG 694
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1064 TGCTTCTCGATTGTCTTGATAAATTCAAGGATCAGGATGAGTTTTATTATGTTAAAAAAG 1123
Query 695 ATTCTCCTGATTCTTCCGAGACAAGGAACGATGAGAAATGGTGGTTACCGGCAGTAAAAG 754
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 ATTCTCCTGATTCTTGCGAGACAAGGAACGATGAGAAATGGTGGTTACCGGCAGTAAAAG 1183
Query 755 TCCCACCTAACGGGCTCTCAGAGATATCGAGAAGGTTTCTCCAGAGCCAGAAGGAATGTG 814
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1184 TCCCACCTAACGGCCTCTCAGAGATATCAAGAAGGTTTCTACAGAGCCAGAAGGAATGTG 1243
Query 815 TGAATCAAGTCCTTAAAGCTGCAATGGCGATAAACGCTCAAGTTCTGTCTGAAATGGAGA 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 TGAATCAAGTCCTTAAAGCTGCAATGGCGATAAACGCTCAAGTTCTGTCTGAAATGGAGA 1303
Query 875 TTCCTGAAAGCTACCTTGAGTCACTTCCTAAGAATGGGAGAGCTAGCTTGGGAGATGTGA 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 TTCCTGAAAGCTACCTTGAGTCACTTCCTAAGAATGGGAGAGCTAGCTTGGGAGATGTGA 1363
Query 935 TATACAGAATGATAACAGTAGAGATGTTTGATGCAGATCAATTCCTTATTGAAATGGATT 994
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1364 TATACAGAATGATAACAGTAGAGATGTTTGATGCAGATCAATTCCTAATTGAAATGGATT 1423
Query 995 TATCATCTGAGCACAAGATTCTTGATTTAAAGAACAGAATCGAAGCATCGATTGTGATAT 1054
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1424 TATCATCTGAGCACAAGATTCTTGATCTAAAGAACAGAATCGAAGCATCGATTGTGATAT 1483
Query 1055 GGAAGAGGAAAATGGTGCAGAAGGACACAAAGTCTCCTTGGGGATCAACAGTGAGTATTG 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 GGAAGAGGAAAATGGTGCAGAAGGACACAAAGTCTCCTTGGGGATCAACAGTGAGTATTG 1543
Query 1115 AGAAAAGAGAACAGTTTGAAGAGAGAGCTGAAACAATCTTGCTACTATTGAAACAAGGGT 1174
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1544 AGAAAAGAGAACAGTTTGAAGAAAGAGCTGAAACCATCTTGCTACTATTAAAACAAGGGT 1603
Query 1175 TTCCCGGAATCTCACAGTCCTCGCTCGATATCAGCAAGATTCAATTCAACAGAGATGTAG 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TTCCCGGAATCTCACAGTCCTCGCTCGATATCAGCAAGATTCAATTCAACAGAGATGTAG 1663
Query 1235 GACTTGCAATCTTGGAGAGTTACTCAAGAGTGCTTGAGAGTTTGGCTCACACCGTGATGT 1294
||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1664 GACTTGCGATATTGGAGAGTTATTCAAGAGTGCTTGAGAGTTTAGCTCACACCGTGATGT 1723
Query 1295 CGAGAATAGAAGACGTCCTTTACGCTGACCAGCTTACTCAAGAACCTACAAATAATGCAC 1354
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1724 CGAGAATAGAAGACGTGCTTTACGCTGATCAGCTTACTCAAGAACCTACAAATAATGCAC 1783
Query 1355 CTTCTAAGAACAGATATAGCTTGAAGGAGAATGAGAAACTAAGGGAGGAAAGACTAAGTT 1414
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1784 CTTCTAAGAACAGATATAGCTTGAAGGAGAATGAGAAACTAAGAGAGGAAAGACTAAGTT 1843
Query 1415 TCACAGAGGATATGGCTTCAGGAACACTTTCTGATGTAATGCAATGGGGTAACAAAAACA 1474
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1844 TCACAGAGGATATGGCTTCAGGAACACTTTCTGATGTTATGCAATGGGGTAACAAAAACA 1903
Query 1475 ACGAATTGAAGAAAGAAAGCTTTTTCGGAGATAGAGAGAAACCGTTGTTGTCGAAAGTCA 1534
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1904 ATGAAATGAAGAAAGAAAGCTTTTTCGGAGATAGAGAGAAACCGTTGTTGTCGAAAGTCA 1963
Query 1535 CCGGTATAATGACTAACAACAAGAAGAGTTCTTATCTTGAAAATCTTGGAGCTATGAGGA 1594
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1964 CAGGTATAATGACTAACAACAAGAAGAGTTCTTATCTTGATAATCTTGGAGCTATGAGGA 2023
Query 1595 GTCCAACCGCGAGATACTCCTGA 1617
|||||||||| ||||||||||||
Sbjct 2024 GTCCAACCGCAAGATACTCCTGA 2046
> AT3G16130.1 | Symbols: ATROPGEF13, ROPGEF13, PIRF2 | RHO guanyl-nucleotide
exchange factor 13 | chr3:5466246-5468774 FORWARD
LENGTH=1993
Length=1993
Score = 758 bits (410), Expect = 0.0
Identities = 865/1078 (80%), Gaps = 58/1078 (5%)
Strand=Plus/Plus
Query 299 TGGAGCAAATGAAAGAGAAATTTTCGAAATTGCTTCTT-GGAGAAGATATGTCAGGA-GG 356
||||||| |||||||| || ||| | ||||||||| || |||||||| ||||||||| ||
Sbjct 386 TGGAGCAGATGAAAGATAAGTTTGCAAAATTGCTT-TTAGGAGAAGACATGTCAGGAGGG 444
Query 357 AGGAAAAGGTGTTTCATCGGCTTTGGCTTTATCTAACGCCATTACCAACCTCGCAGCTTC 416
| | ||||| ||||| || || || || ||||| ||||| || || || || ||||||||
Sbjct 445 A-GCAAAGGCGTTTCTTCAGCGTTAGCATTATCAAACGCAATCACAAATCTTGCAGCTTC 503
Query 417 TGCATTTGGAGAACA-ACGGCGTTTAGAGCCAATGGCGGCGGATAGAAAAACG--CGTTG 473
||| ||||||||| | ||||||||||||| |||| | | ||||| ||||| | || ||
Sbjct 504 TGCGTTTGGAGAA-ATACGGCGTTTAGAGGCAATATCCGAGGATA-AAAAA-GAACGATG 560
Query 474 GAGGAGAGAAATTGGATGGCTTATCTCTGTGGCTGATCATATAGTTGAATTCGCTCCAAC 533
||| |||||||| ||||||||| ||||||| |||||||||||||||||||| |||||||
Sbjct 561 GAGAAGAGAAATCGGATGGCTTCTCTCTGTTACTGATCATATAGTTGAATTCTCTCCAAC 620
Query 534 ACAACAAACAAACAAAGATGGTA-CTTCAATGGAAGTCATGTCAACAAGACAAAGAACAG 592
||| ||||| ||| | ||||| | |||| ||||| || ||| | |||| ||||||||| |
Sbjct 621 ACACCAAACTAACGAGGATGG-ATCTTCCATGGAGGTAATGACTACAAAACAAAGAACTG 679
Query 593 ATCTTCTCTGTAACATCCCTGCACTTAAGAAACTCGATGCTATGCTTCTCGATTGTCTTG 652
||||| ||| ||||| ||| | || ||||||||||||| ||||| |||||||||||||
Sbjct 680 ATCTTGTCTCCAACATTCCTTCTCTAAAGAAACTCGATGAAATGCTCCTCGATTGTCTTG 739
Query 653 ATAAATTCAAGGATCAGGATGAGTTTTATTATGTCAAAAAAGATTCTCCTGATTCT---- 708
|||||||||| ||||||||||||||||| || |||| | | |||||| || |||
Sbjct 740 ATAAATTCAAAGATCAGGATGAGTTTTACTACGTCACACCCGGTTCTCCGGAATCTGAAA 799
Query 709 TCCG--A---GACAAGGAACGATGAGAAATGGTGG-TTACCGGCAGTAAAAGTCCCACCT 762
| | | ||| ||||||||||| ||||||||| || ||| |||||||| ||||||
Sbjct 800 ACAGTAACTCGACCAGGAACGATGATAAATGGTGGCTT-CCGATTGTAAAAGTTCCACCT 858
Query 763 AACGGGC-TCTCAGAGA-TATCGAGAAGGTTTCT-CCAGAGCCAGAAG-GAATGTGTGAA 818
|| ||| | ||||| | | | || ||||||| | | | || || ||| || ||||||
Sbjct 859 AA-AGGCTTATCAGAAACT-TTGAAAAGGTTTTTACTA-AGTCA-AAGAGAGTGTGTGTG 914
Query 819 TCAAGTCCTTAAAGCTGCAATGGCGATAAACGCTCAAGTTCTGT-CTGAAATGGAGATTC 877
||||| ||||| | |||||||| |||||| |||||||||| | ||||||||||||| |
Sbjct 915 CCAAGTGCTTAATTCCGCAATGGCCATAAACTCTCAAGTTCT-TACTGAAATGGAGATCC 973
Query 878 CTGAAAGCTACCTTGAGTCACTTCCTAAGAATGGGAGAGCTAG-CTTGGGAGATGTGATA 936
|||| |||||| | || |||||||||||||| ||||||||||| ||| ||||| ||||
Sbjct 974 CTGAGAGCTACATCGACTCACTTCCTAAGAAAGGGAGAGCTAGTCTT-GGAGACATGATC 1032
Query 937 TACAGAATGATAACAGTAGAGATGTTTGATGCAGATCAATTCCTTATTGAAATGGATTTA 996
|| |||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 1033 TATAGAATGATAACATTAGAGATGTTTGATGCAGAGCAATTTCTTCTTGAAATGGATTTA 1092
Query 997 TCATCTGAGCACAAGATTCTTGATTTAAAGAACAGAAT-CGAAGCATCGATTGTGATATG 1055
|||||||||||||||||||||||||||||||||| ||| |||||| ||| |||| |||||
Sbjct 1093 TCATCTGAGCACAAGATTCTTGATTTAAAGAACA-AATTCGAAGCTTCGGTTGTTATATG 1151
Query 1056 GAAGAGGAAA-ATGGTGCAGA-AGGACA-CAA---A--GTCTCCTTGGGG-ATCAACAGT 1106
| |||| ||| || ||||| | || ||| ||| | |||||| ||| | | | | | |
Sbjct 1152 GCAGAG-AAAGATAGTGCAAATAG-ACAACAAGTCATCGTCTCCGTGGAGTA-CGA-ATT 1207
Query 1107 -GAGTATTGAGAAAAGAGAACAGTTTGAAGAGAGAGCTGAAACAATCTTGCTACT-ATTG 1164
|||||| || || ||| ||||||| ||||| ||||| | ||| || |||| ||| ||
Sbjct 1208 TGAGTATGGATAAGAGACAACAGTTAGAAGAAAGAGCAGCAACCATTTTGCAACTTATC- 1266
Query 1165 AAACAAGGGTTTCCC-GGAATCTCACAGTCCTCGCTCGATATCAGCAAGATTCAATTCAA 1223
||||||| || ||| || ||||| || ||| | || || ||||||||||||||||||||
Sbjct 1267 AAACAAGAATT-CCCAGGGATCTCTCAATCCACACTTGACATCAGCAAGATTCAATTCAA 1325
Query 1224 CAGAGATGTAGGACTT-GCAATCTTGGAGAGTTACTCAAGAGTGCTTGAGAGTTTGGCTC 1282
||||||| |||| || || || |||||||||| || ||| | ||||| || |||||||
Sbjct 1326 CAGAGATATAGGG-TTAGCTATAGTGGAGAGTTATTCGAGAATTCTTGAAAGCTTGGCTC 1384
Query 1283 ACACCGTGATGTCGAGAATAGAAGACGTCCTTTACGCTGACCAGCTTACTCAAGAACC 1340
|||| || ||||| ||||||||||| || ||| | ||||| ||||| || ||| ||||
Sbjct 1385 ACACGGTAATGTCAAGAATAGAAGATGTTCTTGAAGCTGATCAGCTAACACAA-AACC 1441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5