BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337380
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52260.1 | Symbols: ATPDIL1-5, ATPDI3, PDI3, PDIL1-5 | PDI-l... 2390 0.0
> AT1G52260.1 | Symbols: ATPDIL1-5, ATPDI3, PDI3, PDIL1-5 | PDI-like
1-5 | chr1:19460570-19463445 FORWARD LENGTH=1837
Length=1837
Score = 2390 bits (1294), Expect = 0.0
Identities = 1513/1619 (93%), Gaps = 13/1619 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTTAATTTCAAAACCCACT-TCTAAAGTCTCCACCTTTACCTTCATTCTCCTCTT 59
|||||||||||| ||||||||| | || |||||||| ||||||||||||||||||||| |
Sbjct 125 ATGTCGTTAATTCCAAAACCCA-TATCAAAAGTCTCTACCTTTACCTTCATTCTCCTCAT 183
Query 60 ACTCTTCAGTTTCGTAATCATCGTCGCTTACTCATCACCCGATACCAATCTCGAAGCAAA 119
|||| |||||||| ||||||| |||||||||||||||||||| ||||| ||||| ||||
Sbjct 184 ACTCCTCAGTTTCACAATCATCATCGCTTACTCATCACCCGATTCCAATGTCGAATCAAA 243
Query 120 CGAACCCGGATCCGACTCCGATCTAGAACAGCTTCTAGCAGTAGACGAACAGTTACAAGA 179
||||||||||| ||| ||||||||||| |||||||||||||||||||| || |||||||
Sbjct 244 CGAACCCGGATTCGATTCCGATCTAGACCAGCTTCTAGCAGTAGACGAGCAACTACAAGA 303
Query 180 AGATCGACCTGAGCAACAATCAGAAGCCGAAACAGTGAGCAAAGCTCAGAGAATCGTACT 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 304 AGATCGACCTGAGCAACAATCAGAAGCCGAAACAGTAAGCAAAGCTCAGAGAATCGTACT 363
Query 240 GGAGCTCAACGGTGATAACACGAAGCGAGTGATCGATGGAAACGAGTTCGTGATGGT-TC 298
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 364 AGAGCTCAACGGTGATTACACGAAGCGAGTGATCGATGGAAACGAGTTCGTGATGGTGT- 422
Query 299 TAGGTTACGCACCTTGGTGCGCAAGAAGCGCGGAGCTTATGCCGCGATTCGCGG-AGTCT 357
|||| ||||| |||||||| || ||||| ||||||||||||||| ||||||||| || ||
Sbjct 423 TAGGGTACGCGCCTTGGTGTGCGAGAAGTGCGGAGCTTATGCCGAGATTCGCGGAAG-CT 481
Query 358 GCAACGGCTTTGAAGGAGATAGGTAGTCCGATTTTGATGGCTAAGATTGACGGTGATAGG 417
|| ||||||||||| ||||| || ||| || |||||||||||||||||||||||||||||
Sbjct 482 GCGACGGCTTTGAAAGAGATTGGGAGTTCGGTTTTGATGGCTAAGATTGACGGTGATAGG 541
Query 418 TATTCGAAGATCGCATCGGAGCTTGAGATTAAGGGCTTCCCTACGCTTGTTTTCTTTGTT 477
||||||||||| |||||||||||||||||||| || |||||||||||| || ||||||||
Sbjct 542 TATTCGAAGATTGCATCGGAGCTTGAGATTAAAGGTTTCCCTACGCTTCTTCTCTTTGTT 601
Query 478 AATGGCACATCTCAGACTTACAATGGTGGATCTTCCGCAGAGGATATAGTCATTTGGGTG 537
|||||||| |||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 602 AATGGCACTTCTCTTACTTACAATGGTGGATCTTCTGCGGAGGATATAGTCATTTGGGTG 661
Query 538 CAAAAGAAGACTGGTGCACCAATCATTACACTTAATACAGTTGATGAAGCTCAAAGATTT 597
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 662 CAAAAGAAGACTGGTGCACCAATCATTACACTTAATACAGTTGATGAAGCTCCGAGATTT 721
Query 598 C-TGAACAAGTATCATACTTTTGTTCTTGGACTGTTTGAGAAGTTTGAGGGTTCTGAACA 656
| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 722 CTTG-ACAAGTATCATACTTTTGTTCTTGGTCTGTTTGAGAAGTTTGAGGGTTCTGAGCA 780
Query 657 TAATGAATTCGTTAAAGCTGCAAAATCAGATGACGAAATCCAGTTTGTAGAAACAAGCGG 716
||| ||||| ||||||||||| |||||||| || ||||| |||||| |||||||| | |
Sbjct 781 TAACGAATTTGTTAAAGCTGCTAAATCAGACGATGAAATACAGTTTATAGAAACACGTGA 840
Query 717 CAGCGATGTTGCGAAACTTCTTTTTCCTGACT-TTAAAACCAATAATGTGTTTATTGGGA 775
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct 841 TAGCGATGTTGCGAAACTTCTTTTTCCTGA-TCTTAAAAGCAATAATGTGTTTATTGGGT 899
Query 776 TGGTTAAAAATGAGGCTGAAAGGTACACTGTATATGATGGATCTTACAAAATGGAGAAGA 835
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGGTTAAACCTGAGGCTGAAAGGTACACTGTATATGATGGATCTTACAAAATGGAGAAGA 959
Query 836 TATTGGAGTTTCTAGGCAGCAACAAGTTTCCGTTGATTACAAAATTGACTGAAACCAATA 895
|||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 960 TATTAGAGTTTCTAGGCAGCAACAAGTTTCCATTGTTTACAAAATTGACTGAAACCAATA 1019
Query 896 CTGTTTGGGTTTACTCTAGTCCTGTTAAGCTTCAGGTTATGCTCTTCTCCAAGGCTGATG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTGTTTGGGTTTACTCTAGTCCTGTTAAGCTTCAGGTTATGCTCTTCTCCAAGGCTGATG 1079
Query 956 ACTTTCAGAAACTTTCTCAGCCTCTTGAAGATATTGCAAGAAAATTTAAATCGAAGCTTA 1015
| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 ATTTTCAGAAACTTGCTCAGCCTCTTGAAGATATTGCAAGGAAATTTAAATCGAAGCTTA 1139
Query 1016 TGTTTATATATGTCGATATAACAAATGAGAACCTTGCAATGCCATTCTTGACCTTATTCG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1140 TGTTTATATATGTCGATATAACAAATGAGAACCTTGCAATGCCATTCTTGATCTTATTCG 1199
Query 1076 GAATAGAAGCTGGGAATAAAACTGTTATTGCTGCTTTTGATAACAACCTGAACTCCAAGT 1135
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1200 GAATTGAAGCTGGGAATAAAACTGTTGTTGCTGCTTTTGATAACAACCTGAACTCCAAGT 1259
Query 1136 ATTTGCTCGAATCAGTTCCATCACCAAACAATATAGAAGAGTTTTGTTCAGGACTTGCTC 1195
|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 ATTTGCTCGAGTCAGATCCATCACCAAACAGTATAGAAGAGTTTTGTTCAGGACTTGCTC 1319
Query 1196 ATGGAGCTGTTTCACGCTACTATAAGTCAGAGCCAGTTCCAGATAATGAAAACGCAAGCA 1255
||||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1320 ATGGAACTGTTTCACGTTACTATAGGTCAGAGCCAGTTCCTGATAATGAAAACGCAAGCA 1379
Query 1256 TAGTGACTGTGGTGGGAAAGACTTTTGATGAGTTGGTATTAAGCAGTCGCGAGAATGTTC 1315
||||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 1380 TAGTGACTGTGGTAGGAAAGACTTTTGATGGGTTGGTATTAAACAGCCGCGAGAATGTTC 1439
Query 1316 TTCTTGAGGTACATACACCGTGGTGCGTGAACTGCGAGGCACTGAGCAAACAAGTCGAGA 1375
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1440 TTCTTGAGGTACATACACCGTGGTGCGTGAACTGCGAGGCACTAAGCAAACAAATCGAGA 1499
Query 1376 AATTGGCTAAGCATTTCAAAGGCTTTGAGAATCTTGTTTTTGCAAGAATTGATGCATCTG 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AATTGGCTAAGCATTTCAAAGGCTTTGAGAATCTTGTTTTTGCAAGAATTGATGCATCTG 1559
Query 1436 CAAATGAGCATACTAAACTACAGGTTGATGATGAATATCCGATGATTTTGCTCTACAAAT 1495
|||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 1560 CAAATGAGCATACTAAACTACAGGTTGATGATAAATATCCGATAATCTTGCTCTACAAAT 1619
Query 1496 CTGGTGAAAAGGAGAAACCGTTAAAGCTATCAACGAAATTGAACGCAAAGGACATGGCTG 1555
|||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 1620 CTGGCGAAAAGGAGAAACCGTTAAAGCTATCAACGAAATTGAGCGCGAAGGACATAGCTG 1679
Query 1556 TTTTTATCAACGAAGAGTTG---AAACCAAAGGATGGATCTGCTAAAGATGAATTGTAG 1611
|||||||||||||||||||| ||||| ||| |||| |||||||||||||||||||||
Sbjct 1680 TTTTTATCAACGAAGAGTTGTTGAAACCGAAGAATGGGTCTGCTAAAGATGAATTGTAG 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79567863825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5