BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337384
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52315.1 | Symbols: | Regulator of Vps4 activity in the MVB... 1463 0.0
> AT1G52315.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr1:19481188-19482674 FORWARD LENGTH=1068
Length=1068
Score = 1463 bits (792), Expect = 0.0
Identities = 963/1045 (92%), Gaps = 14/1045 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCTTTGGTGCTTCAAACCCAAGTTCTACAAGAAAAGTAAATCTACAACAAGCTAC 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 25 ATGTTTCTTAGGTGCTTCAAACCCAAGTTCTACAAGAAAAGCAAATCTACAACCAGCTAC 84
Query 61 ATGAAGATTAGGCTTGATATAGTGAGGaaaaaaaGGATTGCAATGGTTAAAAATTATAAA 120
|||||||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 85 ATGAAGATTAGGATTGATATAGTTAGGAGAAAAAGGATTGCAATGGTTAGAAATTATAAA 144
Query 121 ACAGATATTGTGAATTTCCTCAATAATGGCCAAGATAT-TGAAGCTTATAAAAGAACAGA 179
||||||||||||||||||||||| |||||||||||| | ||||||||||| |||| ||||
Sbjct 145 ACAGATATTGTGAATTTCCTCAAGAATGGCCAAGAT-TCTGAAGCTTATAGAAGAGCAGA 203
Query 180 ACTATTACTCGAAGAGCTTAGAATAATATCGTGCTACGATCTCATCGAGCGATTCTGCGA 239
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 204 ACTTTTACTCGAAGAGCTGAGAATAATATCGTGCTACGATCTCATCGAGCGATTCTGCGA 263
Query 240 TTGTATCTCTGAAAATCTCTCACTAATGCTGAAGAAAAGGGAATGTCCTGAAGAATGCAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 TTGTATCTCTGAAAATCTCTCACTAATGCTGAAGAAAAGGGAATGTCCTGAAGAATGCAG 323
Query 300 AGAAGCTGTTTCCTCTTTGATATATGCAACGGCATGGGTTCCTGATGTTCCTGAACTTAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 AGAAGCTGTTTCCTCTTTGATATATGCAACGGCATGGGTTCCTGATGTTCCTGAACTTAA 383
Query 360 AGATCTTAGAGCCGTGTTTACGCGTAGATTTGGGACTTTCATTGCTTCATCTGTAAATCA 419
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 384 GGATCTTAGAGCCGTGTTTACGAAAAGATTTGGGAATTTCATTGCTTCATCTGTAAATCA 443
Query 420 TGAGCTCGTTGAGAAAACTGAATTGCGAAGACTTCCTTCACGGGAACTCAAGATTCAAAC 479
|||||| |||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 444 TGAGCTTGTTGAGAAAACTGAATTGTTAAGGCCACCTTCACGGGAACTCAAGATTCAAAC 503
Query 480 AGTGAAAGATGTTGCGAATGAGTTTTCGATCAATTGGGATCCTACACCTCTGAAAATAAT 539
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||| | ||
Sbjct 504 AGTGAAAGATGTTGCGAATGAGTTTTCGATTAACTGGGATCCTACACCTTTGAAACTGAT 563
Query 540 GCTGCTCAGGGAGGGTTCAGCTCTGCAGATTAAGGAAAAGGTCGAGACAAGAGCAGATTA 599
||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 564 GCTGCTCAGAGAGACTTCAGCTCTGCAGATTAAGGACAAGGTCGAGACAAGAGCGGATTA 623
Query 600 TCTGAACAAAGATACAGAGAAAAGTATGATAGATGACCAAAGCGAGGATGAATCGGTTCT 659
||||||||||||||||||||||||| | || ||||| || || || ||||||||||||||
Sbjct 624 TCTGAACAAAGATACAGAGAAAAGTTTCATGGATGAACATAGTGATGATGAATCGGTTCT 683
Query 660 TTCAGAGAGTTGGAGAAGAGATTCATTGTCCAAAGGCAGTTTGAGTTCTAGTTCAAGCTC 719
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TTCTGAGAGTTGGAGAATAGATTCATTGTCCAAAGGCAGTTTGAGTTCTAGTTCAAGCTC 743
Query 720 GAGCTCGAGTTCTCTaagaagagaatctgtaaggaagaagaagaggaagaagaTTTTACC 779
||||||||||||||| |||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 744 GAGCTCGAGTTCTCTTCGAAGGGTATCTGTAAGGAAGAAGAAGGGGAAGAAGATTTTACC 803
Query 780 TTACGGAATAATCACTCCTCCAG----GA-----G---CTGGAAACGATGAGAAAGCACA 827
|||||||||||| || |||||| || | |||||||||| |||||||||||
Sbjct 804 GTACGGAATAATCTCTTCTCCAGACACGAAACTAGGAGCTGGAAACGACGAGAAAGCACA 863
Query 828 AGAGGAGAAAGAAGAGAATAGCAAGAGTATTGATCAAGAAAACTCGAGGTTACTTGGAAT 887
|||||||||||||||||| || |||| | ||||||||||||||| ||||||||||||||
Sbjct 864 AGAGGAGAAAGAAGAGAAGAGAAAGATTGCTGATCAAGAAAACTCAAGGTTACTTGGAAT 923
Query 888 ACAAGGCGGTAGGAGTCTCACAAGCACAAGCAATAACGAAGTTTCCACAACACGAGGGAA 947
|||||| |||||||||||||||| ||||||||||||||||||||||||| | ||| |||
Sbjct 924 ACAAGGTAGTAGGAGTCTCACAAGTACAAGCAATAACGAAGTTTCCACAATAAGAGAGAA 983
Query 948 CGAGAGAACGTCGTCGTTTCAGAGACCTAAGCTCCTTGATTATGATGATGTGGTGGCTCG 1007
|||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 984 CGAGAGAATGTCGTCGTTTCAAAGACCTAACCTCCTTGATTATGATGATGTGGTGGCTCG 1043
Query 1008 ACTTGCAGCTCTGCACCGGAGATAA 1032
||||||||||||| ||||||||||
Sbjct 1044 TCTTGCAGCTCTGCGCCGGAGATAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5