BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg337389

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52340.1 | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATAB...   224    6e-58


> AT1G52340.1 | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, 
ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein 
| chr1:19489794-19491648 REVERSE LENGTH=1182
Length=1182

 Score =  224 bits (121),  Expect = 6e-58
 Identities = 136/143 (95%), Gaps = 2/143 (1%)
 Strand=Plus/Minus

Query  361  CAAAATGGATCATCTGAAGACTTTAAAGGAGTGGTTAGTGCAAGTGAATCCTCCATCAAT  420
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  988  CAAAATGCATCATCTGAAGACTTTAAAGGAGTGGTTAGTGCAAGTGAATCCTCCATCAAT  929

Query  421  CATCAGATTATG-CCTGCTTATGTACCGCGATTCATCGCTCGCCAAAAACAGAACAGCGT  479
            ||||| |||||  || ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  928  CATCAAATTATCTCC-GCTTATGTACCGCGAGTCATCGCTAGCCAAAAACAGAACAGCGT  870

Query  480  TCGCTACATCATCAACCGTCAGT  502
            |||||||||||||||||||||||
Sbjct  869  TCGCTACATCATCAACCGTCAGT  847



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5