BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337391
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52343.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1170 0.0
> AT1G52343.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G32680.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:19494127-19495718 REVERSE LENGTH=849
Length=849
Score = 1170 bits (633), Expect = 0.0
Identities = 713/752 (95%), Gaps = 4/752 (1%)
Strand=Plus/Plus
Query 1 ATGGTGATGGATAGAGAAGAAAGGAGAAGAAGAATAATGGAAAGAGGATCAGATCGTTTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGTGATGGATAGAGAAGAAAGGAGAAGAAGAATAATGGAAAGAGGATCAGATCGTCTA 60
Query 61 GCTTTAATCACAGGCCAATTACATAATCTTGATCCTTCGTCACCGTCGTCTTCTTCCTCA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GCTTTAATCACAGGCCAATTACATAATCTTGATCCTTCATCACCGTCGTCTTCTTCCTCA 120
Query 121 TCATCGGCTTCTCACAACCGCACATACAGCGAATCTTTCATGCCACAAACGAAATCTGAT 180
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 121 TCATCGGCTTCTCACAACCGCACATACAGCGAATCTTTCATGCCACAGACTAAATCTGAT 180
Query 181 CATCATCTTATTAAAGAAAGCCCATCTCTTAAGTATCAATTCAAAGAGGAAGTAAATGCA 240
||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CATCATCAAATTCTAGAAAGCCCATCTCTTAAGTATCAATTCAAAGAGGAAGTAAAGGCA 240
Query 241 AGATCAGAAGAACCAAAACTCTCGACTGTTCTTCACAAACCCTTAAAAAGTGAACCAACA 300
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 241 AGATCAGAAGAACCAAAACTCTCGACTGTTCTTCACAAACCCTTGAAAATTGAACCAACA 300
Query 301 AAACCAGAAGAAGCAACAAGATCAGTAAAGAGTCAAAATCAACGACCTAGGA-GTTTCTG 359
|||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 301 AAACAAGAAGAAGCAACAAGATCACAAAAGAGTCAAAATCAACGACCTAT-ATGTTTCTT 359
Query 360 CAGCTCCAAGAAACTCAATGCTAGCATCATAAGCTCAGAAAGAACTCGGAGTTTAAGCTC 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 CAGCTCCAAGAAACTCAATGCTAGCATCATTAGCTCAGAAAGAACTCGGAGTTTAAGCTC 419
Query 420 TCTCACAATAGCCGCGTTTGTGGTTTTACTCCCGAGATTGAACATTATAAGCTCAGACAC 479
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 420 TCTCACAATAGCCGCATTTGTGGTTTTACTCCCGAGATTGAACATTACAAGCTCAAACAC 479
Query 480 TATCTTAGCTTTGAGACCTCTTTGGTTGCTTATTCTTACAGATTGTGCTATTGTAATGTC 539
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 480 TATCTTAGCTTTGAGACCTCTTTGGTTGCTTATTCTTACAGATTGTGCCATAGTAATGTC 539
Query 540 TCATCTCACCATGGAAACTTCTGGAGGAGGATTGAGCCATGAGATGGAAGATGAAGGAAA 599
||||||||| | |||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 540 TCATCTCACTACGGAAGCTTCTGGAGGAGGATTGAGCCATGAGATGGAAGAAGATGGAAA 599
Query 600 GAGTAA-AGATGGTAATAGTGGAGAAAATTGGTCTGATGCAGAGAAGCTTTTAGAAAGAG 658
| | || ||||||||||| ||||||||| |||||||||||||||| |||| |||||||||
Sbjct 600 GGG-AAGAGATGGTAATAATGGAGAAAACTGGTCTGATGCAGAGAGGCTTCTAGAAAGAG 658
Query 659 GAGTTGTTGTGTATCAAGCTCTTCGTGGAATGTTCATAGATTGTAGTCTCTATATGGTGG 718
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 659 GAGTTGTTGTGTATCAAGCTCTTCGTGGAATGTTCATAGATTGTAGTCTTTATATGGTTG 718
Query 719 TGGTTGTTATTTTTGGAGCCTCTCTTTTTTAA 750
| ||||||||||||||||||||||||||||||
Sbjct 719 TTGTTGTTATTTTTGGAGCCTCTCTTTTTTAA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5