BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg337391 Length=750 Score E Sequences producing significant alignments: (Bits) Value AT1G52343.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1170 0.0 > AT1G52343.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:19494127-19495718 REVERSE LENGTH=849 Length=849 Score = 1170 bits (633), Expect = 0.0 Identities = 713/752 (95%), Gaps = 4/752 (1%) Strand=Plus/Plus Query 1 ATGGTGATGGATAGAGAAGAAAGGAGAAGAAGAATAATGGAAAGAGGATCAGATCGTTTA 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 ATGGTGATGGATAGAGAAGAAAGGAGAAGAAGAATAATGGAAAGAGGATCAGATCGTCTA 60 Query 61 GCTTTAATCACAGGCCAATTACATAATCTTGATCCTTCGTCACCGTCGTCTTCTTCCTCA 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 GCTTTAATCACAGGCCAATTACATAATCTTGATCCTTCATCACCGTCGTCTTCTTCCTCA 120 Query 121 TCATCGGCTTCTCACAACCGCACATACAGCGAATCTTTCATGCCACAAACGAAATCTGAT 180 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 121 TCATCGGCTTCTCACAACCGCACATACAGCGAATCTTTCATGCCACAGACTAAATCTGAT 180 Query 181 CATCATCTTATTAAAGAAAGCCCATCTCTTAAGTATCAATTCAAAGAGGAAGTAAATGCA 240 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 CATCATCAAATTCTAGAAAGCCCATCTCTTAAGTATCAATTCAAAGAGGAAGTAAAGGCA 240 Query 241 AGATCAGAAGAACCAAAACTCTCGACTGTTCTTCACAAACCCTTAAAAAGTGAACCAACA 300 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 241 AGATCAGAAGAACCAAAACTCTCGACTGTTCTTCACAAACCCTTGAAAATTGAACCAACA 300 Query 301 AAACCAGAAGAAGCAACAAGATCAGTAAAGAGTCAAAATCAACGACCTAGGA-GTTTCTG 359 |||| ||||||||||||||||||| ||||||||||||||||||||||| | |||||| Sbjct 301 AAACAAGAAGAAGCAACAAGATCACAAAAGAGTCAAAATCAACGACCTAT-ATGTTTCTT 359 Query 360 CAGCTCCAAGAAACTCAATGCTAGCATCATAAGCTCAGAAAGAACTCGGAGTTTAAGCTC 419 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 360 CAGCTCCAAGAAACTCAATGCTAGCATCATTAGCTCAGAAAGAACTCGGAGTTTAAGCTC 419 Query 420 TCTCACAATAGCCGCGTTTGTGGTTTTACTCCCGAGATTGAACATTATAAGCTCAGACAC 479 ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 420 TCTCACAATAGCCGCATTTGTGGTTTTACTCCCGAGATTGAACATTACAAGCTCAAACAC 479 Query 480 TATCTTAGCTTTGAGACCTCTTTGGTTGCTTATTCTTACAGATTGTGCTATTGTAATGTC 539 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 480 TATCTTAGCTTTGAGACCTCTTTGGTTGCTTATTCTTACAGATTGTGCCATAGTAATGTC 539 Query 540 TCATCTCACCATGGAAACTTCTGGAGGAGGATTGAGCCATGAGATGGAAGATGAAGGAAA 599 ||||||||| | |||| |||||||||||||||||||||||||||||||||| || ||||| Sbjct 540 TCATCTCACTACGGAAGCTTCTGGAGGAGGATTGAGCCATGAGATGGAAGAAGATGGAAA 599 Query 600 GAGTAA-AGATGGTAATAGTGGAGAAAATTGGTCTGATGCAGAGAAGCTTTTAGAAAGAG 658 | | || ||||||||||| ||||||||| |||||||||||||||| |||| ||||||||| Sbjct 600 GGG-AAGAGATGGTAATAATGGAGAAAACTGGTCTGATGCAGAGAGGCTTCTAGAAAGAG 658 Query 659 GAGTTGTTGTGTATCAAGCTCTTCGTGGAATGTTCATAGATTGTAGTCTCTATATGGTGG 718 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 659 GAGTTGTTGTGTATCAAGCTCTTCGTGGAATGTTCATAGATTGTAGTCTTTATATGGTTG 718 Query 719 TGGTTGTTATTTTTGGAGCCTCTCTTTTTTAA 750 | |||||||||||||||||||||||||||||| Sbjct 719 TTGTTGTTATTTTTGGAGCCTCTCTTTTTTAA 750 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36419756575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5