BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337393
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52370.1 | Symbols: | Ribosomal protein L22p/L17e family pr... 1338 0.0
AT4G28360.1 | Symbols: | Ribosomal protein L22p/L17e family pr... 1203 0.0
> AT1G52370.1 | Symbols: | Ribosomal protein L22p/L17e family
protein | chr1:19506435-19508874 FORWARD LENGTH=1107
Length=1107
Score = 1338 bits (724), Expect = 0.0
Identities = 785/814 (96%), Gaps = 5/814 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGGTTGGCAGAGGAATTTACAGATTGTTATTCGTCAAGTTGGTACAAGAGTGAAG 60
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 123 ATGGCGGGTTGGCAGAAGAATTTACAGATTGTTATTCGTCAAGTTGGTAAAAGAGTTAAG 182
Query 61 AACAGTCACATTTCGACGACGGCAAATTACTCTTCCACACGGAATTTGGAATCCCCTTTC 120
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GACAGTCACATTTC--C-ACGGCAAATTACTCTTCCACACGGAATTTGGAATCCCCTTTC 239
Query 121 TCACAAGGTTATTTGCAGAGTCTCTTGAGACCAACCCATTCCTCAAGACCACTGTATTAT 180
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 240 TCACAAGGTTATTTGCAGAGTCTCTTGAGATCAACCTATTCCTCAAGACCACTGTATTAT 299
Query 181 CATCTACAACAACTGGGAATTTCTACCTCAAGACAATTGCAGGCGGGTGAAGAGCCTGTA 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 CATCTACAACAACTGGGAATTTCTACCTCAAGACAATTGCAGGCGGGTGAGGAGCCTGTA 359
Query 241 TCATCACCTTTGTCATCTCCAGCTCTGTTGGGTAGTGGAAAAGAAGAAGAGCAGAAGATT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 TCATCACCTTTGTCATCTCCAGCTCTGCTGGGTAGTGGAAAAGAAGAAGAGCAGAAGATT 419
Query 301 ATCCCAAAGCGTCAGAAAGTTCAGGCTGTCCTCAAGTCCATAAAGCAGAGTCCTAAGAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATCCCAAAGCGTCAGAAAGTTCAGGCTGTCCTCAAGTCCATAAAGCAGAGTCCTAAGAAG 479
Query 361 GTCAACCTGGTTGCAGCACTAGTCCGTGGCATGCGTGTTGAAGATGCTTTGATGCAATTG 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTCAACTTGGTTGCAGCACTAGTCCGTGGCATGCGTGTTGAAGATGCTTTGATGCAATTG 539
Query 421 CAGGTCACGGTCAAACGGGCTTCACAAACCGTGTACCGGGTTATACACGCTGCCCGGGCA 480
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 540 CAGGTCACGGTCAAACGAGCTTCACAAACTGTGTACCGGGTTATACATGCTGCGCGGGCA 599
Query 481 AATGCCACTCATAACCATGGACTAGATCCTGACCGTCTCCTTGTTGCGGAAGCGTTTGTT 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATGCTACTCATAACCATGGACTAGATCCTGACCGTCTCCTTGTTGCGGAAGCGTTTGTT 659
Query 541 GGGAAGGGACTCTTTGGGAAGAAGGTAGCTTACCATGCAAAAGGAAGAAGCGGGATAATA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGAAGGGACTCTTTGGGAAGAAGGTAGCTTACCATGCAAAAGGAAGAAGCGGGATAATA 719
Query 601 TCAATACCGAGGTGTCGTCTAACAGTGATAGTTAGAGAGACGACTCCAGAGGAAGAAGCT 660
|||||||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 720 TCAATACCCAGGTGTCGTCTAACAGTCATAGTCAGAGAGACGACTGCAGAGGAAGAAGCT 779
Query 661 GAGATTGCAAGGCTGAAAGTTCACAATTTTAAGAAGCTAAGCAAGAGGCAGAGACAGCTT 720
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 780 GAGATTGCAAGGCTGAAAGTTCACAATTTTAAGAAGCTAAACAAGCGGCAGAGACAGCTG 839
Query 721 GTACCACACAAGTTGATCGAGACAAGTCCAATCTGGAACCGCAGAGGTACCAAAGGCAAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTACCACACAAGTTGATCGAGACAAGTCCAATCTGGAACCGCAGAGGTACCAAAGGCAAT 899
Query 781 CATC-GGTCCTCAGAGCTGGTACCGTCTCACTAA 813
|| | |||| || ||| |||||||||||||||||
Sbjct 900 CA-CAGGTCATCTGAGTTGGTACCGTCTCACTAA 932
> AT4G28360.1 | Symbols: | Ribosomal protein L22p/L17e family
protein | chr4:14029009-14031040 REVERSE LENGTH=1215
Length=1215
Score = 1203 bits (651), Expect = 0.0
Identities = 765/819 (93%), Gaps = 11/819 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGGTTGGCAGAGGAATTTACAGATTGTTATTCGTCAAGTTGGTACAAGAGTGAAG 60
|||| ||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 115 ATGGTGGGTTGGAAGAGGAATTTGCAGACTGTTATTCGTCAAGTTGGTAGAAGAGTGAAG 174
Query 61 AACAGTCACATTTCGACGACGGCAAATTACTCTTC--C-ACACGGAATTTGGAATCCCCT 117
|||||||||||||| || | |||||||||||||| | || |||||||| |||||||||
Sbjct 175 AACAGTCACATTTCTAC-A--GCAAATTACTCTTCTTCTACTCGGAATTTAGAATCCCCT 231
Query 118 TTCTCACAAGGTTATTTGCAGAGTCTCTTGAGACCAACCCATTCCTCAAGACCACTGTAT 177
|||||||||||||| |||||||||||| |||||||| || | ||||| ||||||||||||
Sbjct 232 TTCTCACAAGGTTACTTGCAGAGTCTCCTGAGACCATCCTACTCCTCCAGACCACTGTAT 291
Query 178 TATCATCTACAACAACTGGGAATTTCTACCTCAAGACAATTGCAGGCGGGTGAAGAGCCT 237
||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||
Sbjct 292 CATCATCTACAACAACTGGGGATCTCTACCTCGAGACAATTGCAGGCGAGTGAAGAGCCT 351
Query 238 GTATCATCACCTTTGTCATCTCCAGCTCTGTTGGGTAGTGGAAAAGAAGAAGAGCAGAAG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GTATCATCACCTTTGTCATCTCCAGCTCTGTTGGGTAGTGGAAAAGAAGAAGAGCAGAAG 411
Query 298 ATTATCCCAAAGCGTCAGAAAGTTCAGGCTGTCCTCAAGTCCATAAAGCAGAGTCCTAAG 357
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 412 ATTATCCCAAAGCGTCAGAAAGTTCAGGCTGTCCTCAAGTCTATAAAGCAGAGTCCTAAG 471
Query 358 AAGGTCAACCTGGTTGCAGCACTAGTCCGTGGCATGCGTGTTGAAGATGCTTTGATGCAA 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 472 AAGGTCAACCTGGTTGCAGCACTAGTCCGTGGCATGCGTGTTGAAGATGCTTTGATCCAA 531
Query 418 TTGCAGGTCACGGTCAAACGGGCTTCACAAACCGTGTACCGGGTTATACACGCTGCCCGG 477
||||||||||| |||||||| ||| ||||||| |||||||||||||| ||||||||||||
Sbjct 532 TTGCAGGTCACAGTCAAACGAGCTGCACAAACTGTGTACCGGGTTATCCACGCTGCCCGG 591
Query 478 GCAAATGCCACTCATAACCATGGACTAGATCCTGACCGTCTCCTTGTTGCGGAAGCGTTT 537
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 592 GCAAATGCTACTCATAACCATGGACTAGATCCTGACCGTCTCCTTGTTGCGGAAGCATTT 651
Query 538 GTTGGGAAGGGACTCTTTGGGAAGAAGGTAGCTTACCATGCAAAAGGAAGAAGCGGGATA 597
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GTTGGGAAGGGACTGTTTGGGAAGAAGGTAGCTTACCATGCAAAAGGAAGAAGCGGGATT 711
Query 598 ATATCAATACCGAGGTGTCGTCTAACAGTGATAGTTAGAGAGACGACTCCAGAGGAAGAA 657
||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 712 ATATCAATACCCCGGTGTCGCCTAACAGTCATAGTTAGAGAGACGACTCCAGAGGAAGAA 771
Query 658 GCTGAGATTGCAAGGCTGAAAGTTCACAATTTTAAGAAGCTAAGCAAGA-GGCAGAGACA 716
||||||||||||||||| ||||||||||||||||||||| |||||| | || |||||||
Sbjct 772 GCTGAGATTGCAAGGCTCAAAGTTCACAATTTTAAGAAGAAAAGCAA-ACGGGAGAGACA 830
Query 717 GCTTGTACCACACAAGTTGATCGAGACAAGTCCAATCTGGAACCGCAGAGGTACCAAAGG 776
|||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 831 GCTTGTACCACACAAGCTCATCGAGACAAGTCCAATATGGAACCGCAGAGGTACCAAAGC 890
Query 777 CAATCATCGGTCCTCAGAGCTGGTAC---CGTCTCACTA 812
||||||||||||||||||| |||||| ||||||||||
Sbjct 891 CAATCATCGGTCCTCAGAGTTGGTACGGTCGTCTCACTA 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5