BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337406
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52540.1 | Symbols: | Protein kinase superfamily protein | ... 1712 0.0
> AT1G52540.1 | Symbols: | Protein kinase superfamily protein
| chr1:19570058-19572204 REVERSE LENGTH=1613
Length=1613
Score = 1712 bits (927), Expect = 0.0
Identities = 1007/1047 (96%), Gaps = 0/1047 (0%)
Strand=Plus/Plus
Query 1 ATGCAAATTTTTAGTTGCTTCTGCTGTGGAAAAGGATTTGATCGGCAAAAGAAGGTGAAA 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 ATGCAAATTTTTAGTTGTTTCTGCTGTGGAAAAGGATTTGATCGGCAAAAGAAGGTGAAA 380
Query 61 ACGGAGCCATCATGGAGGATTTTTTCACTGAAAGAACTTCACGCAGCCACAAACAGTTTT 120
||||||||||| |||||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct 381 ACGGAGCCATCGTGGAGGATCTTTTCACTCAAGGAACTTCACGCAGCAACAAACAGTTTT 440
Query 121 AATTACGACAACAAGCTCGGTGAAGGCCGATTTGGAAGTGTGTATTGGGGTCAGCTATGG 180
|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 441 AATTACGATAACAAGCTCGGTGAAGGCAGATTTGGCAGTGTGTATTGGGGTCAGCTATGG 500
Query 181 GATGGATCTCAAATTGCAGTCAAGAGACTGAAGGCTTGGAGTAGCAGAGAAGATATAGAT 240
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 501 GATGGATCTCAAATTGCAGTCAAGAGATTGAAGGCATGGAGTAGCAGAGAAGAGATAGAT 560
Query 241 TTTGCTGTAGAAGTCGAGATTCTTGCTCGTATCCGTCACAAGAATCTATTGAGTGTTCGA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 561 TTTGCTGTAGAAGTCGAGATTCTTGCTCGTATCCGTCACAAGAATCTATTGAGTGTACGA 620
Query 301 GGTTACTGTGCGGAAGGACAAGAACGACTCATTGTATATGACTACATGCCAAATTTGAGC 360
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 621 GGTTACTGTGCAGAAGGACAAGAACGACTCATTGTATATGATTACATGCCAAATTTGAGC 680
Query 361 TTGGTCTCTCATCTTCATGGTCAGCATTCATCTGAGTCGCTTCTTGATTGGACCAGGCGG 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 681 TTGGTCTCTCATCTTCATGGTCAACATTCATCTGAGTCGCTTCTTGATTGGACTAGGCGG 740
Query 421 ATGAATATTGCTGTAACCTCTGCTCAGGCGATTGCCTACTTACATCATTTTGCAACACCC 480
||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 741 ATGAATATTGCTGTATCTTCTGCTCAGGCGATTGCCTACTTGCATCATTTTGCAACACCT 800
Query 481 CGAATAGTCCATGGAGATGTGAGAGCAAGCAATGTGCTCCTTGATTCTGAGTTTGAAGCT 540
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 801 AGAATAGTCCATGGAGATGTGAGAGCAAGCAATGTGCTGCTAGATTCTGAGTTTGAAGCT 860
Query 541 CGGGTTACAGATTTCGGATACGATAAGCTGATGCCAGATGATGGAGCTAACAAAAGTACC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 861 CGGGTTACAGATTTCGGATACGATAAGCTGATGCCAGATGATGGAGCTAACAAAAGCACC 920
Query 601 AAGGGTAATAACAATGGGTATCTCTCACCAGAATGTATCGAATCTGGAAAAGAATCAGAC 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 AAGGGTAATAACATTGGGTATCTCTCACCAGAATGTATCGAATCTGGAAAAGAATCAGAC 980
Query 661 ATGGGAGATGTGTATAGTTTCGGTGTTCTTTTGCTGGAGCTTGTAACTGGTAAGAGACCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 ATGGGAGATGTGTATAGTTTCGGTGTTCTTTTGCTGGAGCTTGTAACTGGTAAGAGACCT 1040
Query 721 ACTGAAAGGGTAAACTTAACAACAAAGCGGGGTATTACCGAATGGGTTTTACCTCTTGTA 780
|| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1041 ACAGAGAGGGTAAACTTAACAACAAAGAGGGGTATTACCGAATGGGTTTTACCTCTTGTT 1100
Query 781 TACGAAAGAAAGTTTGGTGAAATTGTCGATCAAAGGCTGAATGGGAAGTATGTGGAAGAG 840
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1101 TACGAAAGAAAGTTTGGTGAAATTGTGGATCAAAGGCTGAATGGGAAGTATGTGGAAGAA 1160
Query 841 GAGCTGAAAAGGGTAGTTTTGGTTGGTCTCATGTGTGCTCAGAGGGAGCCAGAGAAGAGA 900
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1161 GAGCTGAAAAGGATAGTTTTGGTTGGTCTCATGTGTGCTCAGAGGGAGTCAGAGAAGAGA 1220
Query 901 CCAACAATGTCTGAAGTTGTGGAGATGCTAATGAATGAATCAAAGGAGAAAATGGCTCAG 960
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1221 CCAACAATGTCTGAAGTTGTGGAGATGCTAATGATTGAATCAAAGGAGAAAATGGCTCAG 1280
Query 961 CTTGAAGCTAATCCACTCTTCAATGAAAACAATGAAGGGGAAGTTATAGATGAAAGCTCA 1020
||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct 1281 CTTGAAGCTAATCCACTCTTCAATGGAAACAATGATGGTGAAGTTATAGATGAAAGCTCA 1340
Query 1021 GAGATCATTTCAGAAGAGAGAGATCAT 1047
||||||||||| |||| ||||||||||
Sbjct 1341 GAGATCATTTCTGAAGTGAGAGATCAT 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5