BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337408
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52560.1 | Symbols: | HSP20-like chaperones superfamily pro... 1062 0.0
> AT1G52560.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:19574760-19575866 REVERSE LENGTH=822
Length=822
Score = 1062 bits (575), Expect = 0.0
Identities = 660/701 (94%), Gaps = 6/701 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCTAGCTCGTCTGGCTTTGAGAAACCTTCAACAAAAACTGTCTCCTAGTCTGATG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 101 ATGGCTCTAGCTCGTCTGGCTTTGAGAAACCTTCAACAAAAACTGTCTCCTAGTTTGATG 160
Query 61 GGTCAATCTTGTGAAAG-GTGTTTGGTAGGAAATCGACATAATCCAATGAAGCTAAACAG 119
||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 161 GGTCAATCTTGTGAAAGAG-GTTTGGTCGGAAATCGACATAATCCAATGAAGCTAAACAG 219
Query 120 ATTCATGGCTACTTCGGCTGGTGAACAAGAGGATAAGAAGAACACAGAAGTGAGTGTGTC 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 220 ATTCATGGCTACTTCGGCTGGTGAACAAGAGGATAAGATGAACACAGAAGTGAGTGTGTC 279
Query 180 TGAGAAGAAATCTCCTCGGCGGAACTTCCCCCGGAGACGTGGCCGGAAAAGTCTCTGGCG 239
|||||||||||||||||| | ||| |||||||||||||||||||| ||||| ||||||||
Sbjct 280 TGAGAAGAAATCTCCTCGACAGAATTTCCCCCGGAGACGTGGCCGAAAAAGCCTCTGGCG 339
Query 240 TAACACTGACGATCATGGCTACTTCGTTCCCACCCTAAATGAGTTCTTTCCTCCGACTCT 299
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 340 TAACACCGACGATCATGGCTACTTCACTCCCACCCTAAATGAGTTCTTTCCTCCGACTAT 399
Query 300 AGGAAATGCTCTGATGCAAGCAACAGGGAACATAAACAGAATCTTCGACAACTTCAACAT 359
||||||| ||||||| |||||||||| ||| || |||||||| ||||||||||||||| |
Sbjct 400 AGGAAATACTCTGATACAAGCAACAGAGAATATGAACAGAATTTTCGACAACTTCAACGT 459
Query 360 TAGA-CCAT-CACAACTAATGGGTCAAGTGAAAGAGCAAGACGACTGTTACAAACTCAGA 417
| | |||| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 460 GA-ATCCATTC-CAACTAATGGGTCAAGTGAAAGAGCAAGACGACTGTTACAAGCTCAGA 517
Query 418 TACGAGGTTCCAGGGCTAACCAAAGATGACGTGAAGATCACGGTAGATGATGGGATCTTG 477
|||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 518 TACGAGGTTCCAGGGCTAACCAAAGAAGACGTGAAGATCACGGTAAATGATGGAATCTTG 577
Query 478 ACGATTAAAGGAGAACACAAGGCGGAGGAAGAAAAAGGCTCACCTGAAGAAGACGAGTAC 537
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 578 ACGATTAAAGGAGATCACAAGGCGGAGGAAGAGAAAGGCTCACCTGAGGAAGACGAGTAC 637
Query 538 TGGTCTTCCAAGAGTTATGGTTACTACAACACGAGCTTGTCGTTGCCTGATGATGCTAAG 597
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 638 TGGTCTTCAAAGAGTTATGGTTACTACAACACGAGCTTATCGTTGCCTGATGATGCTAAG 697
Query 598 GTTGATGATATCAAAGCAGAGCTCAAGAATGGTGTGCTTAATCTTGTGATTCCTAGGACG 657
||||| || || || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GTTGAGGACATTAAGGCGGAGCTCAAGAATGGTGTGCTTAATCTTGTGATTCCTAGGACG 757
Query 658 GAGAAGCCAAAGAAGGATGTTCAGGAGATTTCTGTTGAGTA 698
||||||||||||||| |||||||||||||||||||||||||
Sbjct 758 GAGAAGCCAAAGAAGAATGTTCAGGAGATTTCTGTTGAGTA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5