BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg337410

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52565.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   632    0.0  


> AT1G52565.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G15760.1); Has 
35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 
| chr1:19579886-19580686 REVERSE LENGTH=740
Length=740

 Score =  632 bits (342),  Expect = 0.0
 Identities = 380/397 (96%), Gaps = 8/397 (2%)
 Strand=Plus/Plus

Query  1    ATGACTTGTATACTAAGCTGTTCTCATGGCGTCGTGATCGCAACCGCCATGGTTTTCTCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  ATGACTTGTATACTAAGCTGTTCTCATGGCGTCGTGATCGCAACCGCCATGGTTTTCTCA  235

Query  61   AGTACTGCTCTGTTTCTTGCGATTTCCCGCCAATTCTCTGGAAATCAGACATCAGATCAA  120
            || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  236  AGCACTGCTCTGTTTCTTGCGATTTCCCGCCAATTTTCTGGAAATCAGACATCAGATCAA  295

Query  121  CAAATCCTTCGTTCTTGTCTTTCTTCagaggaaaagaagagacagaggaagaataagaag  180
            |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  296  CAAATCCTCCGTTCTTGTCTTTCTTCAGAGGAAAAGAAGAAACAGAGGAAGAATAAGAAG  355

Query  181  aagaaagtgaaatttgcagagaatgtgaaagagacgaaagGTAACGGTGAAGAGTATCGT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  356  AAGAAAGTGAAATTTGCAGAGAATGTGAAAGAGACGAAAGGTAACGGTGAAGAGTATCGT  415

Query  241  AAGAAGAGGGAACGTCTTCGGAGAATTGTACCGGAACAGATGATTAAACC-GAAGAAGAC  299
            ||||||||      ||||||| |||||||||||||||||||||||||||| || ||| ||
Sbjct  416  AAGAAGAG------TCTTCGGCGAATTGTACCGGAACAGATGATTAAACCTGA-GAAAAC  468

Query  300  CGGTTCGGTTTGTAGAAACAACATGCCTGCTAACCGGATTGCTTTGTACAACGGGATTCT  359
            ||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||
Sbjct  469  CGGTTCGGTTTGTAGAAACGACATGCCTGCTAACCGGATTGCATTGTACAATGGGATTCT  528

Query  360  TAGAGACAGAGATCATCGAATTCAGTGCTCCTATTGA  396
            |||||||||||||||||||||||||||||||||||||
Sbjct  529  TAGAGACAGAGATCATCGAATTCAGTGCTCCTATTGA  565



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5