BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg337411 Length=1032 Score E Sequences producing significant alignments: (Bits) Value AT4G22165.1 | Symbols: | F-box family protein with a domain of... 224 1e-57 AT4G14165.1 | Symbols: | F-box family protein-related | chr4:8... 176 4e-43 AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, s... 163 3e-39 AT4G22180.1 | Symbols: | F-box family protein with a domain of... 134 2e-30 AT4G22660.1 | Symbols: | F-box family protein with a domain of... 108 1e-22 > AT4G22165.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr4:11734328-11735419 FORWARD LENGTH=1092 Length=1092 Score = 224 bits (121), Expect = 1e-57 Identities = 490/655 (75%), Gaps = 78/655 (12%) Strand=Plus/Plus Query 398 GAGAAAACCAAAGATTATCTAGTTGTTTGGGGA-TTAGAGATTGGTGTGTAGTTTACATC 456 ||| || ||||||||||| ||||| | |||||| || ||| || ||||| ||||| | Sbjct 496 GAGGAATCCAAAGATTATATAGTTATGTGGGGACTTGGAGTTTATTGTGTGGTTTATGCC 555 Query 457 AAGAAAGGAGATACCTTC-TGGAACCAAATCCCGCAAACTTCAGATTGTTACCACATGGT 515 ||||||||||||||| || ||||| |||||||| ||||||||| ||| ||| ||||||| Sbjct 556 AAGAAAGGAGATACC-TCGTGGAATCAAATCCCCCAAACTTCATATTTTTATGACATGGT 614 Query 516 TTACAAGGATCACAAGCTTTACTTCTTAAGCTACATTA-TGGGTATTTTTAAAATCTTCG 574 ||||||||||||||||||||||||||||||| | | | ||| || ||| ||||||| | Sbjct 615 TTACAAGGATCACAAGCTTTACTTCTTAAGC-AG-T-ACTGG-TACTTTCCAAATCTTAG 670 Query 575 ATTTTTCTGGAGAGACTCCACAACAAACATTTCACTCTTGTGTTCGTGTGGAACTTTTTC 634 ||||||||| ||||| | |||||||| | ||| | ||| || || ||| || Sbjct 671 ATTTTTCTGAAGAGA-TGGACAACAAA-ACTTC-CAAG-GTG---GTATG---CTTGTT- 719 Query 635 AAATACGTAGACAGCTTGTAGTCACACAACTTGTAGTCACCGTAACAGGAAATGTCCTCA 694 | ||| | | | | ||||||||||| | || | | ||||||| | ||||| Sbjct 720 AGATA-GAA-A-A-CTTGTAGTCAC-------G--GT-A----A-CAGGAAAAGCCCTCA 760 Query 695 AGGTTG-AAAAATGGTATAGAGCTAGGGATAGATCCTTGTCCTTCCGCGTTTTCAAGGTT 753 |||||| ||||||| | ||| ||| ||||| | | |||||| || ||||||||| || Sbjct 761 AGGTTGCAAAAATG-TGGAGACCTACATATAGAACATGGTCCTTTCGGGTTTTCAAGATT 819 Query 754 TATTCATCAGGATTCCTCAAGAAACCAGAACAGATTTATTCTTTGGGCGACGAGTTTAT- 812 | ||||||||||| | |||| | | | || |||||||||| || ||| || Sbjct 820 TCTTCATCAGGATA--T---GAAA--A-A-C---TTGATTCTTTGGGTGATGAGGC-ATT 866 Query 813 GCTTTTGGATCAAGGCATCACTGTGCTCGCCAATAAC-TCTGATGGATTCATTAGAAACT 871 ||||||||||| |||||||||||||||||||| | || | ||| ||||||| ||||| | Sbjct 867 GCTTTTGGATCTAGGCATCACTGTGCTCGCCAGTGACGT-TGAGGGATTCAAAAGAAATT 925 Query 872 CCATCTATTTCAGT---A--C-TAGTCATGGAAA-GAA--T---GCAAATAATATCTTTA 919 |||||||||||||| | | |||| ||| | ||| | |||| | || | ||| Sbjct 926 CCATCTATTTCAGTTGTAGACCTAGTGGTGGTTATGAAACTAACGCAAGTGATTTATTTC 985 Query 920 TCTTCAATCTCGAGACGCAGGAGATGGAGCGGCTTCTGCACACATTATTTGATAGTTCA- 978 | |||||||||||||| ||| ||||||||| | ||||||| | ||||||| |||| Sbjct 986 TTTTCAATCTCGAGACACAGAAGATGGAGC---TACTGCACA-A--ATTTGATTGTTCGT 1039 Query 979 CCTATTCCATTCTCCAGAGT-TCAATGGTTCTTACCAAGTTTCACTCATATATGA 1032 || ||| | ||| ||| | || |||||||||||||||||| ||||| | |||| Sbjct 1040 CCC-TTCAACTCTATAGA-TCTCGATGGTTCTTACCAAGTTTGACTCACACATGA 1092 Score = 158 bits (85), Expect = 1e-37 Identities = 103/112 (92%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 153 GTTGTTCAATCCGGAGGAAAAACACAAACTTTACAAAACGCAAGATCTTGGTGTGGAATT 212 |||||||||||| || |||||| ||||||||||||| | ||||||||||||||||||||| Sbjct 213 GTTGTTCAATCCCGACGAAAAAGACAAACTTTACAAGATGCAAGATCTTGGTGTGGAATT 272 Query 213 TGCAAAGAGTGTTTGTATGGCAACCTATGGAAGTTGGCTCCTAATGCGAGAT 264 ||||||||||||||||| |||||| ||||||||||||||||| |||| |||| Sbjct 273 TGCAAAGAGTGTTTGTAGGGCAACTTATGGAAGTTGGCTCCTGATGCAAGAT 324 > AT4G14165.1 | Symbols: | F-box family protein-related | chr4:8174598-8175715 REVERSE LENGTH=807 Length=807 Score = 176 bits (95), Expect = 4e-43 Identities = 182/223 (82%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 804 CGAGTTTATGCTTTTGGATCAAGGCATCACTGTGCTCGCCAATAACTCTGATGGATTCAT 863 ||||| ||||||||||||||||||||||||||||| |||||| || ||| ||||||||| Sbjct 582 CGAGTCGATGCTTTTGGATCAAGGCATCACTGTGCTAGCCAATGACACTGGTGGATTCAT 641 Query 864 TAGAAACT-CCATCTATTTCAGTACTAGTCATGGAAAGAATGCAAATAATATCTTTATCT 922 |||||| | |||||||||||||| |||||||||| || || || || |||||| ||||| Sbjct 642 TAGAAA-TACCATCTATTTCAGTGCTAGTCATGGGAATAACACACATGATATCTATATCT 700 Query 923 TCAATCTCGAGACGCAGGAGATGGAGCGGCTTCTGCACACATT-AT--TTGATAGTTCAC 979 ||||||||||||| || ||| ||||| ||| | ||||| || || || || |||| Sbjct 701 TCAATCTCGAGACACAAAAGACGGAGCCGCTGCA-CACAC-TTGATAGTT-ATTCTTCAT 757 Query 980 CTA-TTCCATTCTCCAGAGTTCAATGGTTCTTACCAAGTTTCA 1021 | | ||| ||||| ||| |||||||||| |||| ||||||| Sbjct 758 C-AGTTCAATTCTATGGAGCTCAATGGTTCGTACCTAGTTTCA 799 Score = 152 bits (82), Expect = 6e-36 Identities = 242/314 (77%), Gaps = 32/314 (10%) Strand=Plus/Plus Query 459 GAAAGGAGATACCT-TCTGGAACCAAATCCCGC-AAACTTCAGATTGTTACCACATGGTT 516 |||||||||||| | | ||||| |||||||| | ||||||||||||||| |||||||||| Sbjct 276 GAAAGGAGATACATGT-TGGAATCAAATCCC-CAAAACTTCAGATTGTTTCCACATGGTT 333 Query 517 TACAAGGATCACAAGCTTTACTTCTTAAGCTACATTATGGGTATTTTTAAAATCTTCGAT 576 |||||||||||||||||||||||| ||| | | | | || || ||| |||||||| ||| Sbjct 334 TACAAGGATCACAAGCTTTACTTCCTAAACAAAACT--GG-TAGTTTCAAAATCTTTGAT 390 Query 577 TTTTCTGGAGAGACTCCACAACAAACATTTCACTC---T-T----GT-G-----T-TC-G 620 |||| |||||| | |||||||||||| ||| | | | | || | | || | Sbjct 391 TTTTGTGGAGATATTCCACAACAAACCTTTGAGTGGAGTGTTAAAGTTGAAAGATCTCAG 450 Query 621 TGTGGAACTTTTTCA--AA-TA--CG-TAGACAGCTTGTAGTCACACAACTTGTAGTCAC 674 | |||| || | || || || | | || || || | | |||| ||||||||||||| Sbjct 451 TTTGGACCTCCTCCACCAAGTAATCCATGGAAAG-TTCTTGCCACAAAACTTGTAGTCAC 509 Query 675 CGTAACAGGAAATGTCCTCAAGGTTGAA-AAATGGTATAGAGCTAGGGATAGATCCTTGT 733 |||||||||||| ||||||||||||||| |||||| |||| ||| |||| ||| || Sbjct 510 CGTAACAGGAAAAGTCCTCAAGGTTGAAGAAATGGGGG-GAGCGAGGCCTAGAACCTGGT 568 Query 734 CCTTCCGCGTTTTC 747 ||||||| |||||| Sbjct 569 CCTTCCGGGTTTTC 582 > AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, similar to protein; blastp match of 28% identity and 3.1e-07 P-value to GP|13366010|dbj|BAB39287.1||AP002971 P0537A05.16 {Oryza sativa (japonica cultivar-group)} | chr4:11740053-11741234 FORWARD LENGTH=1182 Length=1182 Score = 163 bits (88), Expect = 3e-39 Identities = 110/121 (91%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 144 TTCATGCACGTTGTTCAATCCGGAGGAAAAACACAAACTTTACAAAACGCAAGATCTTGG 203 ||||| |||| | ||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 249 TTCATTCACGCTCCTCAATCCCGAGGAAAAACACAAACGTTACAAAACGCAAGATCTTGG 308 Query 204 TGTGGAATTTGCAAAGAGTGTTTGTATGGCAACCTATGGAAGTTGGCTCCTAATGCGAGA 263 |||||||||||| ||| |||||||||| ||||||||||||||||||||||| |||| ||| Sbjct 309 TGTGGAATTTGCGAAGTGTGTTTGTATAGCAACCTATGGAAGTTGGCTCCTTATGCAAGA 368 Query 264 T 264 | Sbjct 369 T 369 > AT4G22180.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr4:11738574-11739782 FORWARD LENGTH=1209 Length=1209 Score = 134 bits (72), Expect = 2e-30 Identities = 175/222 (79%), Gaps = 18/222 (8%) Strand=Plus/Plus Query 398 GAGAAAACCAAAGATTATC-TAGTTGTTTGGGGA-TTAG-AGATTGGTGTGTAGTTTACA 454 |||||||| |||||||| | ||||| | |||||| || | || || ||||| ||||| Sbjct 538 GAGAAAACAAAAGATTA-CGTAGTTATATGGGGACTTGGAAG-TTCATGTGTGGTTTA-T 594 Query 455 T-CAAGAAAGGAGATACCT-TCTGGAACCAAA-TCCCGCAAACTTCAGATTGTTACCACA 511 | |||||||||||||| | | ||||| |||| ||| | |||||||| ||||| | |||| Sbjct 595 TCCAAGAAAGGAGATAAATGT-TGGAATCAAATTCCAG-AAACTTCAAATTGTCATCACA 652 Query 512 TGGTTTACAAGGATCACAAGCTTTACTTCT-TAAG-CTACATTATGGGTATTT-TTAA-A 567 |||||||||||||||||||||||||||||| || | |||| | | ||| || | | Sbjct 653 TGGTTTACAAGGATCACAAGCTTTACTTCTCTACGTCTACCT-ACAAATATGAATTCAGA 711 Query 568 ATCTTCGATTTTTCTGGAGAGACTCCACAACAAA-CATTTCA 608 ||||| ||||| ||| |||||| ||| ||||||| | ||||| Sbjct 712 ATCTTTGATTTCTCTAGAGAGATTCCTCAACAAATC-TTTCA 752 > AT4G22660.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr4:11914981-11916171 REVERSE LENGTH=1191 Length=1191 Score = 108 bits (58), Expect = 1e-22 Identities = 158/204 (77%), Gaps = 15/204 (7%) Strand=Plus/Plus Query 398 GAGAAAACCAAAGATTATC-TAG-T-TGTTTGGGGATTAGAGATTGGTGTGTAGTTTACA 454 |||||||||||||| || | ||| | || | |||| || || |||||||||| ||||| Sbjct 526 GAGAAAACCAAAGAGTA-CATAGCTCTG-TGGGGGCTTGGATATTGGTGTGTGGTTTATG 583 Query 455 TCAAGAAAGGAGATACCTTCTGGAACCAAA-TCCCGCAA--ACTTCAGATTGT-TACCAC 510 |||||| ||||||| || ||||| |||| ||| | || | || ||||| | | || Sbjct 584 CCAAGAACGGAGATAAGTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCT-TGAC 642 Query 511 ATGGTTTACAAGGATCACAAGCTTTACTTC-TTAAGCTACATTATGGGTATTTTTAAAAT 569 |||||||||||||||||||||||||||| | || ||||||| | | |||| | ||| Sbjct 643 ATGGTTTACAAGGATCACAAGCTTTACT-CATTTAGCTACAGAAA---TCTTTTCACAAT 698 Query 570 CTTCGATTTTTCTGGAGAGACTCC 593 | | |||||||||||||||| ||| Sbjct 699 CCTAGATTTTTCTGGAGAGATTCC 722 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50585786029 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5