BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337411
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22165.1 | Symbols: | F-box family protein with a domain of... 224 1e-57
AT4G14165.1 | Symbols: | F-box family protein-related | chr4:8... 176 4e-43
AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, s... 163 3e-39
AT4G22180.1 | Symbols: | F-box family protein with a domain of... 134 2e-30
AT4G22660.1 | Symbols: | F-box family protein with a domain of... 108 1e-22
> AT4G22165.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11734328-11735419 FORWARD
LENGTH=1092
Length=1092
Score = 224 bits (121), Expect = 1e-57
Identities = 490/655 (75%), Gaps = 78/655 (12%)
Strand=Plus/Plus
Query 398 GAGAAAACCAAAGATTATCTAGTTGTTTGGGGA-TTAGAGATTGGTGTGTAGTTTACATC 456
||| || ||||||||||| ||||| | |||||| || ||| || ||||| ||||| |
Sbjct 496 GAGGAATCCAAAGATTATATAGTTATGTGGGGACTTGGAGTTTATTGTGTGGTTTATGCC 555
Query 457 AAGAAAGGAGATACCTTC-TGGAACCAAATCCCGCAAACTTCAGATTGTTACCACATGGT 515
||||||||||||||| || ||||| |||||||| ||||||||| ||| ||| |||||||
Sbjct 556 AAGAAAGGAGATACC-TCGTGGAATCAAATCCCCCAAACTTCATATTTTTATGACATGGT 614
Query 516 TTACAAGGATCACAAGCTTTACTTCTTAAGCTACATTA-TGGGTATTTTTAAAATCTTCG 574
||||||||||||||||||||||||||||||| | | | ||| || ||| ||||||| |
Sbjct 615 TTACAAGGATCACAAGCTTTACTTCTTAAGC-AG-T-ACTGG-TACTTTCCAAATCTTAG 670
Query 575 ATTTTTCTGGAGAGACTCCACAACAAACATTTCACTCTTGTGTTCGTGTGGAACTTTTTC 634
||||||||| ||||| | |||||||| | ||| | ||| || || ||| ||
Sbjct 671 ATTTTTCTGAAGAGA-TGGACAACAAA-ACTTC-CAAG-GTG---GTATG---CTTGTT- 719
Query 635 AAATACGTAGACAGCTTGTAGTCACACAACTTGTAGTCACCGTAACAGGAAATGTCCTCA 694
| ||| | | | | ||||||||||| | || | | ||||||| | |||||
Sbjct 720 AGATA-GAA-A-A-CTTGTAGTCAC-------G--GT-A----A-CAGGAAAAGCCCTCA 760
Query 695 AGGTTG-AAAAATGGTATAGAGCTAGGGATAGATCCTTGTCCTTCCGCGTTTTCAAGGTT 753
|||||| ||||||| | ||| ||| ||||| | | |||||| || ||||||||| ||
Sbjct 761 AGGTTGCAAAAATG-TGGAGACCTACATATAGAACATGGTCCTTTCGGGTTTTCAAGATT 819
Query 754 TATTCATCAGGATTCCTCAAGAAACCAGAACAGATTTATTCTTTGGGCGACGAGTTTAT- 812
| ||||||||||| | |||| | | | || |||||||||| || ||| ||
Sbjct 820 TCTTCATCAGGATA--T---GAAA--A-A-C---TTGATTCTTTGGGTGATGAGGC-ATT 866
Query 813 GCTTTTGGATCAAGGCATCACTGTGCTCGCCAATAAC-TCTGATGGATTCATTAGAAACT 871
||||||||||| |||||||||||||||||||| | || | ||| ||||||| ||||| |
Sbjct 867 GCTTTTGGATCTAGGCATCACTGTGCTCGCCAGTGACGT-TGAGGGATTCAAAAGAAATT 925
Query 872 CCATCTATTTCAGT---A--C-TAGTCATGGAAA-GAA--T---GCAAATAATATCTTTA 919
|||||||||||||| | | |||| ||| | ||| | |||| | || | |||
Sbjct 926 CCATCTATTTCAGTTGTAGACCTAGTGGTGGTTATGAAACTAACGCAAGTGATTTATTTC 985
Query 920 TCTTCAATCTCGAGACGCAGGAGATGGAGCGGCTTCTGCACACATTATTTGATAGTTCA- 978
| |||||||||||||| ||| ||||||||| | ||||||| | ||||||| ||||
Sbjct 986 TTTTCAATCTCGAGACACAGAAGATGGAGC---TACTGCACA-A--ATTTGATTGTTCGT 1039
Query 979 CCTATTCCATTCTCCAGAGT-TCAATGGTTCTTACCAAGTTTCACTCATATATGA 1032
|| ||| | ||| ||| | || |||||||||||||||||| ||||| | ||||
Sbjct 1040 CCC-TTCAACTCTATAGA-TCTCGATGGTTCTTACCAAGTTTGACTCACACATGA 1092
Score = 158 bits (85), Expect = 1e-37
Identities = 103/112 (92%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 153 GTTGTTCAATCCGGAGGAAAAACACAAACTTTACAAAACGCAAGATCTTGGTGTGGAATT 212
|||||||||||| || |||||| ||||||||||||| | |||||||||||||||||||||
Sbjct 213 GTTGTTCAATCCCGACGAAAAAGACAAACTTTACAAGATGCAAGATCTTGGTGTGGAATT 272
Query 213 TGCAAAGAGTGTTTGTATGGCAACCTATGGAAGTTGGCTCCTAATGCGAGAT 264
||||||||||||||||| |||||| ||||||||||||||||| |||| ||||
Sbjct 273 TGCAAAGAGTGTTTGTAGGGCAACTTATGGAAGTTGGCTCCTGATGCAAGAT 324
> AT4G14165.1 | Symbols: | F-box family protein-related | chr4:8174598-8175715
REVERSE LENGTH=807
Length=807
Score = 176 bits (95), Expect = 4e-43
Identities = 182/223 (82%), Gaps = 10/223 (4%)
Strand=Plus/Plus
Query 804 CGAGTTTATGCTTTTGGATCAAGGCATCACTGTGCTCGCCAATAACTCTGATGGATTCAT 863
||||| ||||||||||||||||||||||||||||| |||||| || ||| |||||||||
Sbjct 582 CGAGTCGATGCTTTTGGATCAAGGCATCACTGTGCTAGCCAATGACACTGGTGGATTCAT 641
Query 864 TAGAAACT-CCATCTATTTCAGTACTAGTCATGGAAAGAATGCAAATAATATCTTTATCT 922
|||||| | |||||||||||||| |||||||||| || || || || |||||| |||||
Sbjct 642 TAGAAA-TACCATCTATTTCAGTGCTAGTCATGGGAATAACACACATGATATCTATATCT 700
Query 923 TCAATCTCGAGACGCAGGAGATGGAGCGGCTTCTGCACACATT-AT--TTGATAGTTCAC 979
||||||||||||| || ||| ||||| ||| | ||||| || || || || ||||
Sbjct 701 TCAATCTCGAGACACAAAAGACGGAGCCGCTGCA-CACAC-TTGATAGTT-ATTCTTCAT 757
Query 980 CTA-TTCCATTCTCCAGAGTTCAATGGTTCTTACCAAGTTTCA 1021
| | ||| ||||| ||| |||||||||| |||| |||||||
Sbjct 758 C-AGTTCAATTCTATGGAGCTCAATGGTTCGTACCTAGTTTCA 799
Score = 152 bits (82), Expect = 6e-36
Identities = 242/314 (77%), Gaps = 32/314 (10%)
Strand=Plus/Plus
Query 459 GAAAGGAGATACCT-TCTGGAACCAAATCCCGC-AAACTTCAGATTGTTACCACATGGTT 516
|||||||||||| | | ||||| |||||||| | ||||||||||||||| ||||||||||
Sbjct 276 GAAAGGAGATACATGT-TGGAATCAAATCCC-CAAAACTTCAGATTGTTTCCACATGGTT 333
Query 517 TACAAGGATCACAAGCTTTACTTCTTAAGCTACATTATGGGTATTTTTAAAATCTTCGAT 576
|||||||||||||||||||||||| ||| | | | | || || ||| |||||||| |||
Sbjct 334 TACAAGGATCACAAGCTTTACTTCCTAAACAAAACT--GG-TAGTTTCAAAATCTTTGAT 390
Query 577 TTTTCTGGAGAGACTCCACAACAAACATTTCACTC---T-T----GT-G-----T-TC-G 620
|||| |||||| | |||||||||||| ||| | | | | || | | || |
Sbjct 391 TTTTGTGGAGATATTCCACAACAAACCTTTGAGTGGAGTGTTAAAGTTGAAAGATCTCAG 450
Query 621 TGTGGAACTTTTTCA--AA-TA--CG-TAGACAGCTTGTAGTCACACAACTTGTAGTCAC 674
| |||| || | || || || | | || || || | | |||| |||||||||||||
Sbjct 451 TTTGGACCTCCTCCACCAAGTAATCCATGGAAAG-TTCTTGCCACAAAACTTGTAGTCAC 509
Query 675 CGTAACAGGAAATGTCCTCAAGGTTGAA-AAATGGTATAGAGCTAGGGATAGATCCTTGT 733
|||||||||||| ||||||||||||||| |||||| |||| ||| |||| ||| ||
Sbjct 510 CGTAACAGGAAAAGTCCTCAAGGTTGAAGAAATGGGGG-GAGCGAGGCCTAGAACCTGGT 568
Query 734 CCTTCCGCGTTTTC 747
||||||| ||||||
Sbjct 569 CCTTCCGGGTTTTC 582
> AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16,
similar to protein; blastp match of 28% identity and 3.1e-07
P-value to GP|13366010|dbj|BAB39287.1||AP002971 P0537A05.16
{Oryza sativa (japonica cultivar-group)} | chr4:11740053-11741234
FORWARD LENGTH=1182
Length=1182
Score = 163 bits (88), Expect = 3e-39
Identities = 110/121 (91%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 144 TTCATGCACGTTGTTCAATCCGGAGGAAAAACACAAACTTTACAAAACGCAAGATCTTGG 203
||||| |||| | ||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 249 TTCATTCACGCTCCTCAATCCCGAGGAAAAACACAAACGTTACAAAACGCAAGATCTTGG 308
Query 204 TGTGGAATTTGCAAAGAGTGTTTGTATGGCAACCTATGGAAGTTGGCTCCTAATGCGAGA 263
|||||||||||| ||| |||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 309 TGTGGAATTTGCGAAGTGTGTTTGTATAGCAACCTATGGAAGTTGGCTCCTTATGCAAGA 368
Query 264 T 264
|
Sbjct 369 T 369
> AT4G22180.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11738574-11739782 FORWARD
LENGTH=1209
Length=1209
Score = 134 bits (72), Expect = 2e-30
Identities = 175/222 (79%), Gaps = 18/222 (8%)
Strand=Plus/Plus
Query 398 GAGAAAACCAAAGATTATC-TAGTTGTTTGGGGA-TTAG-AGATTGGTGTGTAGTTTACA 454
|||||||| |||||||| | ||||| | |||||| || | || || ||||| |||||
Sbjct 538 GAGAAAACAAAAGATTA-CGTAGTTATATGGGGACTTGGAAG-TTCATGTGTGGTTTA-T 594
Query 455 T-CAAGAAAGGAGATACCT-TCTGGAACCAAA-TCCCGCAAACTTCAGATTGTTACCACA 511
| |||||||||||||| | | ||||| |||| ||| | |||||||| ||||| | ||||
Sbjct 595 TCCAAGAAAGGAGATAAATGT-TGGAATCAAATTCCAG-AAACTTCAAATTGTCATCACA 652
Query 512 TGGTTTACAAGGATCACAAGCTTTACTTCT-TAAG-CTACATTATGGGTATTT-TTAA-A 567
|||||||||||||||||||||||||||||| || | |||| | | ||| || | |
Sbjct 653 TGGTTTACAAGGATCACAAGCTTTACTTCTCTACGTCTACCT-ACAAATATGAATTCAGA 711
Query 568 ATCTTCGATTTTTCTGGAGAGACTCCACAACAAA-CATTTCA 608
||||| ||||| ||| |||||| ||| ||||||| | |||||
Sbjct 712 ATCTTTGATTTCTCTAGAGAGATTCCTCAACAAATC-TTTCA 752
> AT4G22660.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11914981-11916171 REVERSE
LENGTH=1191
Length=1191
Score = 108 bits (58), Expect = 1e-22
Identities = 158/204 (77%), Gaps = 15/204 (7%)
Strand=Plus/Plus
Query 398 GAGAAAACCAAAGATTATC-TAG-T-TGTTTGGGGATTAGAGATTGGTGTGTAGTTTACA 454
|||||||||||||| || | ||| | || | |||| || || |||||||||| |||||
Sbjct 526 GAGAAAACCAAAGAGTA-CATAGCTCTG-TGGGGGCTTGGATATTGGTGTGTGGTTTATG 583
Query 455 TCAAGAAAGGAGATACCTTCTGGAACCAAA-TCCCGCAA--ACTTCAGATTGT-TACCAC 510
|||||| ||||||| || ||||| |||| ||| | || | || ||||| | | ||
Sbjct 584 CCAAGAACGGAGATAAGTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCT-TGAC 642
Query 511 ATGGTTTACAAGGATCACAAGCTTTACTTC-TTAAGCTACATTATGGGTATTTTTAAAAT 569
|||||||||||||||||||||||||||| | || ||||||| | | |||| | |||
Sbjct 643 ATGGTTTACAAGGATCACAAGCTTTACT-CATTTAGCTACAGAAA---TCTTTTCACAAT 698
Query 570 CTTCGATTTTTCTGGAGAGACTCC 593
| | |||||||||||||||| |||
Sbjct 699 CCTAGATTTTTCTGGAGAGATTCC 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5