BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337420
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52660.1 | Symbols: | P-loop containing nucleoside triphosp... 1801 0.0
> AT1G52660.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:19613475-19614796
FORWARD LENGTH=1140
Length=1140
Score = 1801 bits (975), Expect = 0.0
Identities = 1086/1141 (95%), Gaps = 2/1141 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGATTTTAAGAGTTTGGTTACTAGATGCATCTATGTTGGGAAGATGAATGAT 60
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAAAGATTTCAAGAGTTTGGTTACTAGATGCATCTATGTTGGGAAGATGAATGAT 60
Query 61 AATGCAAAGAAGCTGAAAATCGCAACCGAAGAACTCAAAGATCTTGGCAGCAACGTGATG 120
||||||||||||||||||||||| || || || |||||||||||||| | ||||||||||
Sbjct 61 AATGCAAAGAAGCTGAAAATCGCGACGGAGGAGCTCAAAGATCTTGGAAACAACGTGATG 120
Query 121 AAAAGAGTCAAGATTTGTGAGGAGCAGCAACAGATGAAGCGGCTAGACAAAGTTCAATCA 180
|||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 121 AAAAGAGTCAAGCTTTGTGAGGAGCAGCAACAGATGAAGCGGCTTGACAAAGTCCAAACA 180
Query 181 TGGCTAAGACAAGCTGACACTGTTATTAAAGAGGCTGAGGAATATTTCTTGATGTCTTCT 240
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 TGGCTAAGACAAGCCGACACTGTTATTAAAGAAGCTGAGGAGTATTTCTTGATGTCTTCT 240
Query 241 TCGTCTTCTTCTTCCGGTTTGATATCTTCGAGCCACAAGATGGAGAAGAAGATTTGCAAG 300
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TCGTCTTCTTCTTCTGGTTTGATATCGTCGAGCCACAAGATGGAGAAGAAGATTTGCAAG 300
Query 301 AAGCTGAAAGAGGTTCAAGAGATTAAGAGCAGAGGAATGTTTGAAGTTGTTGCGGAAAGC 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 301 AAGCTGAAAGAGGTTCAGGAGATTAAGAGCAGAGGAATGTTTGAAGTTGTTGCTGAGAGC 360
Query 361 ATTGGAGGCATTGGAGGAGGAGG-GGGTGGTGGATTGACGGTTAAGGATAGCGATGAGCA 419
| |||||||||||||||||| || ||| || ||||||||| |||||||||||||||||||
Sbjct 361 ACTGGAGGCATTGGAGGAGG-GGCGGGCGGCGGATTGACGATTAAGGATAGCGATGAGCA 419
Query 420 GACGATTGGGTTAGAGGCGGTTTCGGGTTTGGTTTGGAGGTGTTTGACCATGGAGAACAC 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GACGATTGGGTTAGAGGCGGTTTCGGGTTTGGTTTGGAGGTGTTTGACGATGGAGAACAC 479
Query 480 TGGGATTATTGGATTATATGGTGTGGAAGGTGTTGGAAAGACGACGGTTTTGACTCAGGT 539
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TGGTATTATTGGATTATATGGTGTGGAAGGTGTTGGAAAGACGACTGTTTTGACTCAGGT 539
Query 540 TAATAATAGGTTGCTTCAACAGAAAGCGAATGGGTTTGATTTTGTTTTGTGGGTGTTTGT 599
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 TAATAACAGGTTGCTTCAACAGAAAGCAAATGGGTTTGATTTTGTTTTGTGGGTGTTTGT 599
Query 600 GTCCAAGAATCTGAATCTTGAAAAGATTCAAGACACAATCAGGGAGAAGATTGGGTTCTT 659
||||||||| ||||||||| | ||||||||||| || || ||||||||||||||||||||
Sbjct 600 GTCCAAGAACCTGAATCTTCAGAAGATTCAAGATACGATTAGGGAGAAGATTGGGTTCTT 659
Query 660 GGATAGGACGTGGACGAGTAAGTCCGAGGAAGAGAAAGCTGCAAAGATCTTTGAGATCTT 719
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 GGATAGGACTTGGACGAGTAAGTCCGAGGAAGAGAAAGCTGCGAAGATCTTTGAGATCTT 719
Query 720 GAGTAAGAGACGGTTTGCTTTGTTTCTTGATGATGTTTGGGAGAAAGTTGATCTTGTGAA 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAGTAAGAGACGGTTCGCTTTGTTTCTTGATGATGTTTGGGAGAAAGTTGATCTTGTGAA 779
Query 780 AGCTGGAGTTCCGCCACCGGATGCACAAAACCGGTCGAAGATAGTGTTCACGACATGTTC 839
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 780 AGCTGGAGTTCCGCCACCGGATGCGCAGAACCGGTCGAAGATAGTGTTCACGACATGTTC 839
Query 840 CGAAGAAGTTTGTAAGGAGATGAGTGCACAAACGAAGATCAAAGTAGAGAAATTGGCGTG 899
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 840 CGAAGAAGTTTGTAAGGAGATGAGTGCACAGACAAAGATCAAAGTAGAGAAATTGGCATG 899
Query 900 GGAACGAGCTTGGGACTTGTTTAAGAAGAATGTTGGAGAAGATACTGTGAAGAGCCACCC 959
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 900 GGAACGAGCTTGGGACTTGTTTAAGAAGAATGTTGGAGAAGATACTATAAAGAGCCACCC 959
Query 960 GGATATAGCCAAGGTGGCTCAAGAGGTTGCAGCCAGGTGCGACGGTCTTCCTCTAGCTTT 1019
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGACATAGCCAAAGTGGCTCAAGAGGTTGCAGCCAGGTGCGACGGTCTTCCTCTAGCTTT 1019
Query 1020 GGTCACCATTGGCCGAGCCATGGCTTCCAAGAAAACTCCTCAAGAATGGCGTGACGCATT 1079
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1020 GGTCACCATTGGCCGAGCCATGGCCTCCAAGAAAACCCCTCAAGAATGGCGTGACGCCTT 1079
Query 1080 GTACATCTTGAGTAACTCTCCACCTAATTTCTCAGTTCTCAAGTTACTGGACAGGAACTA 1139
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1080 GTACATCTTGAGTAACTCTCCTCCTAATTTCTCAGTTCTAAAGTTACTGGACAGGAACTA 1139
Query 1140 G 1140
|
Sbjct 1140 G 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5