BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337498
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53360.1 | Symbols: | F-box associated ubiquitination effec... 588 6e-167
AT1G53370.1 | Symbols: | F-box and associated interaction doma... 313 4e-84
AT1G53815.1 | Symbols: | F-box family protein | chr1:20090249-... 80.5 4e-14
> AT1G53360.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:19907517-19908548 FORWARD LENGTH=1032
Length=1032
Score = 588 bits (318), Expect = 6e-167
Identities = 827/1059 (78%), Gaps = 89/1059 (8%)
Strand=Plus/Plus
Query 115 AGAGTTCCC-GCAAGGTCTATAGCTAGGTTTCGTTGCGTATCGAAATT-ATGGGAATCCA 172
|||| |||| |||| |||||||||||||||||||||||||||| ||| || || |
Sbjct 10 AGAG-TCCCGGCAAAGTCTATAGCTAGGTTTCGTTGCGTATCGGAATCCAT-----TC-A 62
Query 173 TACTAGGTAGTCCTGATTTCACAGAGCTGTTCCTGACTAAGTCTGTAG-CTCGTCCACGG 231
| | | | |||||||| ||||||||| || ||||||||||||| | | |||||||||||
Sbjct 63 T-C--G-TCGTCCTGATGTCACAGAGCAGTCCCTGACTAAGTCTAT-GTCTCGTCCACGG 117
Query 232 CTCTTGTTTGCTTTGGAAGTTGGTAAAGAGTTATTCGTCTTT-TCTTCACCTCAACCTCA 290
||||||||||| ||||||||| |||||| ||||| || ||| |||||||||||||||||
Sbjct 118 CTCTTGTTTGCCTTGGAAGTTAATAAAGATTTATT-GTTTTTCTCTTCACCTCAACCTCA 176
Query 291 AAATCCAGATGAGAACTCGTCTCTTGTAGCCACCCCTTATAAGTATTTTCCCAAAGATTT 350
||||||| |||| ||||| ||||||||||||||||| |||||| |||||| ||| ||||
Sbjct 177 AAATCCATATGATAACTCTTCTCTTGTAGCCACCCCATATAAGCGTTTTCCGAAATATTT 236
Query 351 TCCAATCA-ATATATGTCCCCCGCTCAATGGATTGGTATTTCTTCAGGATTTG--AA-AC 406
|||| || | || ||| | ||||| ||||||||| || |||||| | | | || |
Sbjct 237 GCCAACCAGA-ATCTGTACAACGCTCGGTGGATTGGTCTTCCTTCAGAAATGGCTAAGAA 295
Query 407 GAAAA-CTGCAGGTGGTTTATAACCCCGTTACG-GGAGAGTCCATAACCTTACCCGAAGT 464
|||| | || |||| ||| |||||| || | | ||||| | |||||||||||| ||||
Sbjct 296 AAAAAAC-GCGGGTGATTTGTAACCCTGTCA-GTGGAGATTATATAACCTTACCCAAAGT 353
Query 465 GACAGCAACTACAAGTTTTAAAAGAAGCTATTTTAGTTTTGATCCGATCAGCAAAAAGTG 524
|| ||| ||| ||| | || | |||||||| | ||||||||||||| |||| |||
Sbjct 354 GAAAGCCACTGGT-GTTGGAGAA-A-GCTATTTTGGCTTTGATCCGATCACCAAACAGTT 410
Query 525 GAAAGTCTTGTATATGGAA-TGGTCACGTGATGGAACACCCAA-A-TCTACTTACGTTTT 581
||||| |||| |||| | ||||||||| ||||||||||||| | || || | |||||
Sbjct 411 CAAAGTGTTGTGTATG-ACGTGGTCACGTTATGGAACACCCAATACTC-ACC-AGGTTTT 467
Query 582 GACATTGAAGACTGGAAAATGTTTATGGAGGAAGATCCAAGACCCAGTATTTCCCCAT-A 640
||||||| ||||||||||| |||||||||||| ||||||||| ||| || |||||||| |
Sbjct 468 GACATTGGAGACTGGAAAACGTTTATGGAGGACGATCCAAGATCCAATACTTCCCCATTA 527
Query 641 CTCCTAGATGTGAT-GAAATATGCATAAATGGAGTTTTGTATTACGGAGCTTCCGCTAAA 699
|| ||| | |||| ||| ||||||||||||| |||||||| ||||||||| | ||
Sbjct 528 -TCGTAGTTTTGATAGAA-TATGCATAAATGGTGTTTTGTACTACGGAGCTGATTTTGAA 585
Query 700 GGATATTATAGCTA-TAAGATAGTATGCTTCGACTTTAGGTTTGAGAAATTCGGCCGTAT 758
| || | | | || ||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 586 GAATCTCA-ATCTTCTAAGATAGTTTGCTTCGACTTTAGGTTTGAGAAATTCAGCTTTAT 644
Query 759 TAA----G---AT-AA---ATG----GAG--A-TCATACGTGGACTTTGTTTAACTGCAA 800
||| | || || ||| | | | | ||| ||||||||||| |||| |||
Sbjct 645 TAACATAGCTGATGAAGGCATGTTCCGTGGGAGTTATAAATGGACTTTGTTCAACTACAA 704
Query 801 AGGTAAATTAGGTGCACATCAGTATAACCTTTGGGGTTACGAAAAACTTACGTTGTGGGT 860
||||||||||||||||||||| ||| || | ||| ||||| ||||||||
Sbjct 705 AGGTAAATTAGGTGCACATCA--ATA---TTCAAGAA-ACGGCGAACTTGTATTGTGGGT 758
Query 861 T-TTAGAAGATGCTGGAAAAC-ATCAATGGTCTAAGAGTATATGCATACTGCCATCC-AT 917
| || |||||||||| ||||| || ||||||| || |||||||||||| ||||| || ||
Sbjct 759 TCTT-GAAGATGCTG-AAAACCATAAATGGTCCAAAAGTATATGCATATTGCCA-CCTAT 815
Query 918 AGTCTACAAGAAGAACATGATTGTCGGAATGACTAGTAGCGG-AGAGCTTGTGTTTACGC 976
|||| |||| | | || |||||| ||| |||| ||| ||| |||| |||||||| | |
Sbjct 816 AGTCCACAACA-G--CAGGATTGTTGGAGTGACGGGTA-CGGGAGAGATTGTGTTTTCAC 871
Query 977 CATACGCATGCTATCTATCAAAC-------AT-TTT-CTTCTACAATATCGAGAGGAAGA 1027
| ||||| |||||| | | | | || ||| ||||||||||||| ||| |||||
Sbjct 872 CTTACGCGTGCTATATGCCCAGCCCTTTCTATATTTTCTTCTACAATATCCAGACGAAGA 931
Query 1028 CTTATACAAGAGT-CAATATTAAGGGATTTGAAGAGTTTAACCATCAATTT-ACTTTGGT 1085
||| ||||||||| || | |||||||||||||||||||||| ||| ||||| ||| | |
Sbjct 932 CTTGTACAAGAGTGCA-TGTTAAGGGATTTGAAGAGTTTAAGCAT-AATTTCACTCTCCT 989
Query 1086 TCACACCTTTCTAGACTTTGTAGAGAATATTAACTTTAT 1124
|||||| |||||||||||||| ||| ||| || |||||
Sbjct 990 TCACACTTTTCTAGACTTTGTTGAGGATACGAAGTTTAT 1028
> AT1G53370.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:19910516-19911646 FORWARD LENGTH=1068
Length=1068
Score = 313 bits (169), Expect = 4e-84
Identities = 302/364 (83%), Gaps = 17/364 (5%)
Strand=Plus/Plus
Query 3 GAAAAACGTGGAGCAGCATTTCTCAGAGGATC-TATTGATCACACAATCTTCCAACGCGG 61
||||||| || ||||||| |||||| |||||| | |||||||||| ||| || ||| ||
Sbjct 4 GAAAAAC-TGAAGCAGCAGTTCTCAAAGGATCGT-TTGATCACACCATCGTCGAACTTGG 61
Query 62 TAAGAAATTACTCATA-CCT-AATCCCATTTGAGATTCTTATCGATATATTCTCGAGAGT 119
||||||| || |||| || ||||||| |||| ||||||| |||||||| |||||| |
Sbjct 62 TAAGAAACTA--CATAGACTCAATCCCAGTTGATCTTCTTATTGATATATTATCGAGATT 119
Query 120 TCCCGCAAGGTCTATAGCTAGGTTTCGTTGCGTATCGAAATTATGGGAATCCATACTAGG 179
|||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 120 TCCCCCAAAATCTATAGCTAGGTTTTATTGCGTATCGAAATTATGGGAATCCATACTTCG 179
Query 180 TAGTCCTGATTTCACAGAGCTGTTCCTGACTAAGTCTGTAGCTCGTCCACGGCTCTTGTT 239
| ||||||||||||| ||||||| ||||||||| |||||||||| || | ||||||| ||
Sbjct 180 TGGTCCTGATTTCACGGAGCTGTACCTGACTAAATCTGTAGCTCTTCGAAGGCTCTT-TT 238
Query 240 T-GCTTTGGAAGTTGGTAAAGAGTTATTCGTCTTT-TCTTCACCTCAACCTCAAAATCCA 297
| || | ||||| || ||||||||| || ||| ||||||||||||||||||| ||||
Sbjct 239 TCGCCCTCAAAGTTAATACAGAGTTATTGGT-TTTCTCTTCACCTCAACCTCAAATTCCA 297
Query 298 GATGAGAACTCGTCTCTTGTAG------CCACCCCTTATAAGTATTTTCCCAAAGATTTT 351
||||||||||| |||||||||| |||| |||||||||| |||||||||| | ||
Sbjct 298 GATGAGAACTCTTCTCTTGTAGTTGAAGCCACTCCTTATAAGTGTTTTCCCAAAAAAATT 357
Query 352 CCAA 355
||||
Sbjct 358 CCAA 361
Score = 230 bits (124), Expect = 4e-59
Identities = 244/298 (82%), Gaps = 23/298 (8%)
Strand=Plus/Plus
Query 1164 TTTGTTCAACTGCAAAGGTAAATTAGGTTTACATTACTATG-CAGCTTG-GTATAGACAA 1221
|||||||||||||||||||||||||||| ||||| | |||| | | || || |||| ||
Sbjct 729 TTTGTTCAACTGCAAAGGTAAATTAGGTGTACATCAGTATGAC-G-TTCAGTCTAGA-AA 785
Query 1222 -GAAGAAGAACTTGTGTTGTATGTTCTAGAAGATGCTGGAAAACATAAATGGTCCAAAAG 1280
||| || | |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 786 CGAA-AA-A-CTTGTGTTCCATGTTCTAGAAGATGCTGAAAAACATAAATGGTCCAAAAG 842
Query 1281 TATATGCATACTCCCA-CCTATAGTC-CACAACAACAAT-ATTGTTGGAATGACTTGTAC 1337
|||||||||| | ||| || ||||| | | || || ||||||| ||| ||||||||
Sbjct 843 TATATGCATATTGCCATCCG-TAGTCTC-CGGGAA-AAGGATTGTTGAAATTACTTGTAC 899
Query 1338 GG-AGAGATTGTGTTTTCGCCGTACCCATG-CTATCTACCAAGCACTTTCTGCATTTTCT 1395
|| |||||||||||||||||| | || | || ||||| | | |||||| ||||||||
Sbjct 900 GGGAGAGATTGTGTTTTCGCCAT-CCGGGGGCTCTCTAC-AC-C-CTTTCTACATTTTCT 955
Query 1396 TCTACAACATGGAGAGGAAGACTTGTACAAGAGTC-AATATTAAGGGATTTGAAGAGT 1452
||||||| || ||||| ||||||| |||||||||| || || ||||||||| || |||
Sbjct 956 TCTACAATATCGAGAGAAAGACTTATACAAGAGTCCAA-ATCAAGGGATTTAAAAAGT 1012
> AT1G53815.1 | Symbols: | F-box family protein | chr1:20090249-20090962
REVERSE LENGTH=714
Length=714
Score = 80.5 bits (43), Expect = 4e-14
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 274 TCTTCACCTCAACCTCAAAATCCAGATGAGAACTCGTCTCTTGTAGCCACCC 325
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 295 TCTTCACCTCAGCCTCACAATCCGGATGAGAACTCGTCTCTTGTAGCCACCC 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5