BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337517
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53550.1 | Symbols: | F-box family protein | chr1:19983411-... 813 0.0
AT1G53815.1 | Symbols: | F-box family protein | chr1:20090249-... 320 1e-86
> AT1G53550.1 | Symbols: | F-box family protein | chr1:19983411-19984637
FORWARD LENGTH=1227
Length=1227
Score = 813 bits (440), Expect = 0.0
Identities = 628/717 (88%), Gaps = 19/717 (3%)
Strand=Plus/Plus
Query 1 ATGAGAAAACGTAAGCAGCAAGTTTACAAGGATAACCTAATCGTAGCCAGATCCAATAAA 60
||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 1 ATGAGAAAACGTAAGCAGCAAGTTTACAACGATAACCTTATCGTATCCAGATCCAATAAA 60
Query 61 CGATCTTCAACATCTGGAGAGGAAACATGTTACTTTGATCCGATTCCCGTTGATCTCATC 120
|||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||
Sbjct 61 CGATCTTCAACATCTGGAAAGGAAACGTGCTACTTTGATCCGATTCCCGTTGATCTCGTC 120
Query 121 ATCAATATCTTGTCGAGATTGCCTCTGGAGTGTATTGCGAGGTGTCGTTGTGTATCCAAA 180
||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||
Sbjct 121 ATCAATATCTTGTCGAGATTGTCTCTGGAGTGTATAGCAAGGTGTCGTTGTGTATCGAAA 180
Query 181 CTGTGGTCGTCCATAGTTCGCCGTCCAAATTACAACCTGTTGTTCCCGTTCAAGTCTCCG 240
||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 181 CTGTGGTCGTCCATAATTCGCCGTCCAAATTACAACCAGTTGTTCCCGGTCAAGTCTTCG 240
Query 241 GCTACACCGCGGCTCCTTTTCG-CGTTCAAAGTTTCA-GAAGAGTTGTTATTCAACTCTT 298
||||||||||| || ||||||| | ||||||||| || | ||||||||| ||||||||||
Sbjct 241 GCTACACCGCGTCTTCTTTTCGTC-TTCAAAGTTGCACG-AGAGTTGTTTTTCAACTCTT 298
Query 299 CACCTCAGCCTCACAATCCGTGTAGGAACTTGTCTCTTGTAGCCACCTCTCTTCAGAGGA 358
||||||||| | |||||| | | |||| ||||||||| ||||| |||||||||| ||
Sbjct 299 CACCTCAGCATTTCAATCC--G-AATAACTCGTCTCTTGTCGCCACTTCTCTTCAGAAGA 355
Query 359 CTTCTAGCGCAA-ATTTCT-TTAAGTTTTGTCGCCCTGTCCACGGATTGGTCTGTCGCCA 416
|||||||| ||| | |||| | || || ||||| |||||||| ||| || | ||| | ||
Sbjct 356 CTTCTAGCACAAGA-TTCTCTCAA-TTATGTCGTCCTGTCCATGGACTGATATGTAGTCA 413
Query 417 ACATATCGAAAATAACTATTCAGTGGCGGTAATTTATAATCCCATC-ACAGGAGAGTCTT 475
||||||||| | || |||| | | || | |||| |||||||| | |||||||||| |
Sbjct 414 GCATATCGAAGAGAATTATTTATTTGCCTTGATTTCTAATCCCA-CGACAGGAGAGTATA 472
Query 476 TCA-CTTTACCCAAACTGAGAATGGAGGGGATGAATTCAGAGAGGAGAAATGGAAAAGTA 534
| | | |||||||||| ||||||||||| |||||||||||||| || || || |||||||
Sbjct 473 T-AGCCTTACCCAAACAGAGAATGGAGGAGATGAATTCAGAGACGATAATTGAAAAAGTA 531
Query 535 AGATATTCTTTTGGGTATGATCCGATCGAAAAACAATTCAAGGTATTGCGTATCACATGG 594
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 532 AGATATTCTTTTGGGTATGATCCGATTGACAAACAATTCAAGGTATTGCGTATCACATGG 591
Query 595 TTGCGTAGCGGCTCACACGAGCGGTCTAGTGAGTATCAAGTTCTAACGTTAGGGTTTGGA 654
|||| ||| |||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 592 TTGCATAGAGGCTCACACGAGTGGTCTAGTGAGTATCAAGTTCTGACATTAGGGTTTGGA 651
Query 655 AATCATT-CATGGAGAAAGA-TCCAATGTCGCATAGTTCATTATCCACTAGAAGATA 709
||| ||| |||||||||| | || ||||| || |||||||||||| ||| |||||||
Sbjct 652 AAT-ATTTCATGGAGAAATACTC-AATGTTGCGTAGTTCATTATCTACTTGAAGATA 706
> AT1G53815.1 | Symbols: | F-box family protein | chr1:20090249-20090962
REVERSE LENGTH=714
Length=714
Score = 320 bits (173), Expect = 1e-86
Identities = 483/624 (77%), Gaps = 56/624 (9%)
Strand=Plus/Plus
Query 50 GATCCAATAAA-CGATCTTCAACATCTGGAGAGGAA-ACAT-G-TTACTTTGATCCGATT 105
||||||||||| || ||||||||| ||||| | || |||| | ||||||| || || |
Sbjct 50 GATCCAATAAACCG-TCTTCAACACCTGGA-A--AAGACATAGAATACTTTGGTCTGA-T 104
Query 106 CCC-GTTGATCTCATCATC---AATATCTTGTCGAGATTGCCTCTGGAGTGTATTGCGAG 161
||| ||||||||| ||||| |||||||| ||||||||||| ||| ||| || || |
Sbjct 105 CCCTGTTGATCTCTTCATCAGTAATATCTTATCGAGATTGCCGCTGAAGTCTAAAGCTAA 164
Query 162 GTGTCGTTGTGTATCCAAACTGTGGTCGTCCATAGTTCGCCGTCCAAATTACAACCTGTT 221
|||||| || ||||| || || |||||||||||| ||||||||||||||||||||| |||
Sbjct 165 GTGTCGCTGCGTATCGAAGCTCTGGTCGTCCATAATTCGCCGTCCAAATTACAACCAGTT 224
Query 222 GTTCCCGTTCAAGTCTCCGGCTACACCGCGGCTCCTTTTCGCGTTCAAAGT-TTCA-GAA 279
||||||| ||||||| || ||| |||||| |||||||| | || || | | || |||
Sbjct 225 GTTCCCGATCAAGTCCCCAGCT---CCGCGGATCCTTTTCACCATCGAA-TATGCAGGAA 280
Query 280 GAGTTGTTATTCAACTCTTCACCTCAGCCTCACAATCC-G-TGTAGGAACTTGTCTCTTG 337
||||| || ||||||||||||||||||||||||| | || | ||||| ||||||||
Sbjct 281 -TCTTGTTCTTTTACTCTTCACCTCAGCCTCACAATCCGGATG-A-GAACTCGTCTCTTG 337
Query 338 TAGCCA-CCTCTCTTCAGAGGACTTCTAGCGCAAATTTCTTTAAGTTTTGTCGCCCTGTC 396
|||||| ||| || ||||| ||| || | | || |||| | || | ||| | ||||||
Sbjct 338 TAGCCACCCT-TCATCAGAACACTGGTAACACCAAGTTCTATGAGATATGTGGTCCTGTC 396
Query 397 CACGGATTGGT-CTGTCGCCAACATATCGAAAATAACTATTCAG-TGGCGGTAATTTATA 454
|||| ||| |||| | | || | || | |||||| ||| ||| |||||||
Sbjct 397 TGCGGACGGGTACTGT-G---TC--GTC-AGTAT-A--ATTCAGTTGG-GGTGATTTATA 445
Query 455 ATCCCATCACAGGAGAGTCTTTC--ACTTTACCCAAACTGAGAATGGAGGGGATGAATTC 512
||||||||||||||||||| ||| || || || ||||| || | ||||||| || |
Sbjct 446 ATCCCATCACAGGAGAGTC-TTCAAAC-TTGCCGAAACTAAGTTTAAAGGGGATTAA-TA 502
Query 513 AG--AGAG-GAGAAATG-GA-AAAGTAAGATATTCTTTTGGGTATGATCCGATCGAAAAA 567
|| |||| | | ||| || |||| |||||||||||||||||||||||| ||||| |||
Sbjct 503 AGTCAGAGTG-GTTATGTGATAAAGCAAGATATTCTTTTGGGTATGATCCAATCGAGAAA 561
Query 568 CAATTCAAGGTATTGCGTATCACATGGTTGCGTAGC-GGCTCACA-CGAGCG-GTCTAGT 624
|| |||| || ||| ||||||| |||||||||| | |||||| | | | | ||| | |
Sbjct 562 CAGCTCAAAGTGTTGTGTATCACCTGGTTGCGTA-CTGGCTCAGAGC-A-CTTGTCCAAT 618
Query 625 GAGTATCAAGTTCTAACGTTAGGG 648
|||||||||||||| || ||||||
Sbjct 619 GAGTATCAAGTTCTCACATTAGGG 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5