BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337527
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 165 6e-40
AT1G53620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 113 2e-24
> AT1G53610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53620.1); Has
14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20008996-20009320
REVERSE LENGTH=285
Length=285
Score = 165 bits (89), Expect = 6e-40
Identities = 172/211 (82%), Gaps = 10/211 (5%)
Strand=Plus/Plus
Query 1 ATGGATG-CTTTTGTTATTGTCATTATTATAGTATGTGCCTGTATTGTTTTGC-CATTGT 58
||||| | || |||||| |||| ||||| ||||| ||||||| || |||| | | |||
Sbjct 1 ATGGA-GCCTGTTGTTAATGTCGTTATTGCAGTATCTGCCTGTGTTATTTT-CGCGTTGA 58
Query 59 TTATCCTATGCTGTGTCCTCACCCACATAAAGAAAAAGCCATCAGTGTCTCAGCCGCCAG 118
|| || || ||||||| || || | | |||||| |||| | |||||||||| | ||
Sbjct 59 TTGTCATAGGCTGTGT-CT--CCTATAGGAAGAAAGAGCC-T--TTGTCTCAGCCACGAG 112
Query 119 ATTTGGAAACGGGTAAAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAAATG 178
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 ATTTGGAAACGGGTGTAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAAATG 172
Query 179 ATGCCACGACATCTGTCGTAACAGCGGCTGT 209
||||||| ||| |||| ||| | || |||||
Sbjct 173 ATGCCACCACAGCTGTTGTAGCTGCAGCTGT 203
Score = 97.1 bits (52), Expect = 2e-19
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 244 TGTTGTAGATGC-GATGATGGTGGTGGAGGAGGAGATGGCGGCGGTTGTGGAGGTTGCGG 302
|||||||| ||| | || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 186 TGTTGTAGCTGCAGCTG-TGGTGATGGTGGAGGAGATGGCGGCGGTTGTGGAGGTTGCGG 244
Query 303 CGGCTGTGGAG 313
|||||||||||
Sbjct 245 CGGCTGTGGAG 255
> AT1G53620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53610.1); Has
5795 Blast hits to 2209 proteins in 338 species: Archae -
0; Bacteria - 1555; Metazoa - 2403; Fungi - 181; Plants - 1035;
Viruses - 76; Other Eukaryotes - 545 (source: NCBI BLink).
| chr1:20011429-20011925 REVERSE LENGTH=497
Length=497
Score = 113 bits (61), Expect = 2e-24
Identities = 241/323 (75%), Gaps = 32/323 (10%)
Strand=Plus/Plus
Query 1 ATGGATG-CTTTTGTTATTGTCATTATTATAGTATGTGCCTGTATTGTTTTGC-CATTGT 58
||||| | || |||||| |||||| |||||| || |||||||| || |||| | |||
Sbjct 19 ATGGA-GCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGTTATTTT-CGTGTTGA 76
Query 59 TTATCCTATGCTGTGTCCTCACCCACATAAAGAAAAAGCCATCAGTGTCTCAGCCGCCAG 118
| || |||||||| | || |||| | |||||| |||| | ||| |||||||| |
Sbjct 77 CTGTCATATGCTGTAT-CT--CCCATAGGAAGAAAGAGCC-T--TTGTTTCAGCCGCGGG 130
Query 119 ATTTGG-AAACGGGTAAAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAA-A 176
|||||| |||| ||| | |||||| |||||||||||||||||||||||||||||||| |
Sbjct 131 ATTTGGAAAAC-GGTTTAGCGGGAATAAAAGATGGAGGACTTGTTGTTTTGACAGGAACA 189
Query 177 --TGATGCCAC-GACATCTGTCGTAACAGCGGCTGTAATCACCGCAGATCCTGGCGGTGG 233
|| || | | | ||| |||| | || || || | | | ||||||||
Sbjct 190 GCTGTTGTTGCTG-CGGGTGTAACCACAGAA-C-GT--TCTG-GCGGTTGC-GGCGGTGG 242
Query 234 -G-AG-TGGTTGTTGTTGTAGATGCGATGATGGTGGTGGAGGAGGAGATGGCGGCGGTTG 290
| || |||| | ||||| |||| | ||||| ||||||||||| | ||| ||||||||
Sbjct 243 AGGAGATGGTGGCGGTTGT-GATG-G-TGATGCTGGTGGAGGAG-A--TGGTGGCGGTTG 296
Query 291 TGGAGGTTGCGGCGGCTGTGGAG 313
||||||||| |||||||||||||
Sbjct 297 TGGAGGTTGTGGCGGCTGTGGAG 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5