BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg337527 Length=834 Score E Sequences producing significant alignments: (Bits) Value AT1G53610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 165 6e-40 AT1G53620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 113 2e-24 > AT1G53610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53620.1); Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20008996-20009320 REVERSE LENGTH=285 Length=285 Score = 165 bits (89), Expect = 6e-40 Identities = 172/211 (82%), Gaps = 10/211 (5%) Strand=Plus/Plus Query 1 ATGGATG-CTTTTGTTATTGTCATTATTATAGTATGTGCCTGTATTGTTTTGC-CATTGT 58 ||||| | || |||||| |||| ||||| ||||| ||||||| || |||| | | ||| Sbjct 1 ATGGA-GCCTGTTGTTAATGTCGTTATTGCAGTATCTGCCTGTGTTATTTT-CGCGTTGA 58 Query 59 TTATCCTATGCTGTGTCCTCACCCACATAAAGAAAAAGCCATCAGTGTCTCAGCCGCCAG 118 || || || ||||||| || || | | |||||| |||| | |||||||||| | || Sbjct 59 TTGTCATAGGCTGTGT-CT--CCTATAGGAAGAAAGAGCC-T--TTGTCTCAGCCACGAG 112 Query 119 ATTTGGAAACGGGTAAAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAAATG 178 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 113 ATTTGGAAACGGGTGTAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAAATG 172 Query 179 ATGCCACGACATCTGTCGTAACAGCGGCTGT 209 ||||||| ||| |||| ||| | || ||||| Sbjct 173 ATGCCACCACAGCTGTTGTAGCTGCAGCTGT 203 Score = 97.1 bits (52), Expect = 2e-19 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 244 TGTTGTAGATGC-GATGATGGTGGTGGAGGAGGAGATGGCGGCGGTTGTGGAGGTTGCGG 302 |||||||| ||| | || ||||| ||| |||||||||||||||||||||||||||||||| Sbjct 186 TGTTGTAGCTGCAGCTG-TGGTGATGGTGGAGGAGATGGCGGCGGTTGTGGAGGTTGCGG 244 Query 303 CGGCTGTGGAG 313 ||||||||||| Sbjct 245 CGGCTGTGGAG 255 > AT1G53620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53610.1); Has 5795 Blast hits to 2209 proteins in 338 species: Archae - 0; Bacteria - 1555; Metazoa - 2403; Fungi - 181; Plants - 1035; Viruses - 76; Other Eukaryotes - 545 (source: NCBI BLink). | chr1:20011429-20011925 REVERSE LENGTH=497 Length=497 Score = 113 bits (61), Expect = 2e-24 Identities = 241/323 (75%), Gaps = 32/323 (10%) Strand=Plus/Plus Query 1 ATGGATG-CTTTTGTTATTGTCATTATTATAGTATGTGCCTGTATTGTTTTGC-CATTGT 58 ||||| | || |||||| |||||| |||||| || |||||||| || |||| | ||| Sbjct 19 ATGGA-GCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGTTATTTT-CGTGTTGA 76 Query 59 TTATCCTATGCTGTGTCCTCACCCACATAAAGAAAAAGCCATCAGTGTCTCAGCCGCCAG 118 | || |||||||| | || |||| | |||||| |||| | ||| |||||||| | Sbjct 77 CTGTCATATGCTGTAT-CT--CCCATAGGAAGAAAGAGCC-T--TTGTTTCAGCCGCGGG 130 Query 119 ATTTGG-AAACGGGTAAAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAA-A 176 |||||| |||| ||| | |||||| |||||||||||||||||||||||||||||||| | Sbjct 131 ATTTGGAAAAC-GGTTTAGCGGGAATAAAAGATGGAGGACTTGTTGTTTTGACAGGAACA 189 Query 177 --TGATGCCAC-GACATCTGTCGTAACAGCGGCTGTAATCACCGCAGATCCTGGCGGTGG 233 || || | | | ||| |||| | || || || | | | |||||||| Sbjct 190 GCTGTTGTTGCTG-CGGGTGTAACCACAGAA-C-GT--TCTG-GCGGTTGC-GGCGGTGG 242 Query 234 -G-AG-TGGTTGTTGTTGTAGATGCGATGATGGTGGTGGAGGAGGAGATGGCGGCGGTTG 290 | || |||| | ||||| |||| | ||||| ||||||||||| | ||| |||||||| Sbjct 243 AGGAGATGGTGGCGGTTGT-GATG-G-TGATGCTGGTGGAGGAG-A--TGGTGGCGGTTG 296 Query 291 TGGAGGTTGCGGCGGCTGTGGAG 313 ||||||||| ||||||||||||| Sbjct 297 TGGAGGTTGTGGCGGCTGTGGAG 319 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40639424923 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5