BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337546
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53360.1 | Symbols: | F-box associated ubiquitination effec... 527 6e-149
> AT1G53360.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:19907517-19908548 FORWARD LENGTH=1032
Length=1032
Score = 527 bits (285), Expect = 6e-149
Identities = 551/674 (82%), Gaps = 40/674 (6%)
Strand=Plus/Plus
Query 69 GAATTGGCGAAGAATAAAAGCGCGGGTGATTTGTAACCCCCTCACGGGGA-AGTCTAAAA 127
||| |||| ||||| |||| ||||||||||||||||||| ||| | ||| | | || ||
Sbjct 282 GAAATGGCTAAGAAAAAAAACGCGGGTGATTTGTAACCCTGTCA-GTGGAGATTATATAA 340
Query 128 CCTTACCCAAAGTGAAAGCCACCGGTGTTGGAGAAAGCTATTTTGGCTTTGATCCGATCA 187
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 341 CCTTACCCAAAGTGAAAGCCACTGGTGTTGGAGAAAGCTATTTTGGCTTTGATCCGATCA 400
Query 188 GCAAACAGTTCAAAGTGTTGTGTATGACATGGTCACGTTATGGAATACCCAATACTCATC 247
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct 401 CCAAACAGTTCAAAGTGTTGTGTATGACGTGGTCACGTTATGGAACACCCAATACTCACC 460
Query 248 -GTATTTTGACACTGGAGACTGGAAAACGTTTATGGAGGACGATCCAAGACCCAGTA-TT 305
| |||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 461 AGG-TTTTGACATTGGAGACTGGAAAACGTTTATGGAGGACGATCCAAGATCCAATACTT 519
Query 306 ACCCCATTTTTATA-TAGGTGATGGAATATGCATAAATGGTGTTTTGTATTACGAAGCTT 364
||||||| | || | |||| ||||||||||||||||||||||||| |||| ||||
Sbjct 520 -CCCCATTATCGTAGTTT-TGATAGAATATGCATAAATGGTGTTTTGTACTACGGAGCTG 577
Query 365 CTTTTAAAGAATCTCGATCTTATGAGATAGTTTGCTTCGACTTTAAGATTGAGAAATTCA 424
|||| ||||||||| ||||| | ||||||||||||||||||||| | ||||||||||||
Sbjct 578 ATTTTGAAGAATCTCAATCTTCTAAGATAGTTTGCTTCGACTTTAGGTTTGAGAAATTCA 637
Query 425 GCTTTATTAA-ATTAGAT-A--AAGACATGGTACGTGGTA---AGAAGTTAACTTTGTTC 477
|||||||||| || || | | ||| |||| | ||||| | | || | |||||||||
Sbjct 638 GCTTTATTAACAT-AGCTGATGAAGGCATGTTCCGTGGGAGTTATAAATGGACTTTGTTC 696
Query 478 AACTACAAAGGTAAATTAGGTGCACATCAGGATATCCGTTGGCGTACAGGAAAATTTGCG 537
||||||||||||||||||||||||||||| |||| | | || || || |||
Sbjct 697 AACTACAAAGGTAAATTAGGTGCACATCA--ATATTCAA-GAA--AC-GGCGAACTTGTA 750
Query 538 TTGTGGGTTCTAGAAGATGCTGGAAAAC-ATAAATGGTCCAAGCGTATATGCGCCCTGCC 596
||||||||||| |||||||||| ||||| ||||||||||||| |||||||| ||||
Sbjct 751 TTGTGGGTTCTTGAAGATGCTG-AAAACCATAAATGGTCCAAAAGTATATGCATATTGCC 809
Query 597 ACCTTTC-TGCGACAAAATAGTCAACACGCACATGATGGTTGGAATGACTGTTACCGGTG 655
|||| | | | || ||||| ||| ||| |||||| |||| | ||| || |
Sbjct 810 ACCTATAGT-C--CA-------CAACA-GCAG--GATTGTTGGAGTGACGGGTACGGGAG 856
Query 656 AAATTGTGTATTCGCCGTACGCGGGCTATCT-CTCAAACCCTTTCGACATTTTCTACTAC 714
| ||||||| ||| || |||||| ||||| | | || ||||||| | ||||||| ||||
Sbjct 857 AGATTGTGTTTTCACCTTACGCGTGCTATATGCCCAG-CCCTTTCTATATTTTCTTCTAC 915
Query 715 AATATCGAGAGGAA 728
|||||| ||| |||
Sbjct 916 AATATCCAGACGAA 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5