BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337565
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54040.2 | Symbols: ESP, TASTY | epithiospecifier protein | ... 989 0.0
AT1G54035.1 | Symbols: | pseudogene of epithiospecifier protei... 553 1e-156
> AT1G54040.2 | Symbols: ESP, TASTY | epithiospecifier protein
| chr1:20170715-20173949 REVERSE LENGTH=1370
Length=1370
Score = 989 bits (535), Expect = 0.0
Identities = 882/1046 (84%), Gaps = 37/1046 (4%)
Strand=Plus/Plus
Query 1 ATGGCTGCGACTTTTCAAGGCGGGTGGATCAAGGTGGAGCAGAGAGGAGGAAAGGGACCA 60
|||||| ||||||| |||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 65 ATGGCTCCGACTTTGCAAGGCCAGTGGATCAAGGTGGGGCAGAAAGGAGGAACGGGACCA 124
Query 61 GGACCAAGATGTTCACACGGCATGGCGGTGATTGGAGACAAACTCTACTGTTTGGGAGGC 120
||||| ||| ||||||||||||| || | | | |||||||| |||||| |||| || |||
Sbjct 125 GGACCTAGAAGTTCACACGGCATAGCCGCGGTCGGAGACAAGCTCTACAGTTTCGGCGGC 184
Query 121 GAGTTAAAACCAAACGAAGC-CATCGACAAAGACCTTTACGTTTTTGACTTCAACACTCA 179
||||||| ||||||| || | ||||||||||||||| ||||| |||||||||||||||||
Sbjct 185 GAGTTAACACCAAAC-AAACACATCGACAAAGACCTCTACGTCTTTGACTTCAACACTCA 243
Query 180 CACCTGGTCAATCGCTC--CGGCAAACGGAGACGTCCCC--C-GCAT-CAGCACTTTCGG 233
|| ||||||||||||| | |||| ||||||| |||| | | || | | | || ||
Sbjct 244 AACTTGGTCAATCGCTCAAC-CCAAA-GGAGACG-CCCCAACTGTATCCTG--C-TTAGG 297
Query 234 CGTCCGTATGGTTGCCGTGGGAACTAAGCTCTATGTCTTTGGAGGTCGCAATGAAAAGCG 293
||| || ||||| ||||||||||||||| ||||| |||||||||| ||| |||| || ||
Sbjct 298 CGTGCGCATGGTGGCCGTGGGAACTAAGATCTATATCTTTGGAGGCCGCGATGAGAACCG 357
Query 294 CGAGTTCAG-CGACTTTTACTCGTATGATACGGTGAAAAACGAGTGGA-AGTTCCTGACA 351
| | ||| | ||||| ||| || |||||||||| | |||||||| | ||||||||
Sbjct 358 CAACTTC-GAAAACTTTCGCTCCTACGATACGGTGACATCCGAGTGGACA-TTCCTGACG 415
Query 352 AAGCTCGATGTTGAGGGAGGACCCGAGGCTCGTACTTTCCATTCGATGGCTTCAGATGAA 411
||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 416 AAGCTTGATGAGGTGGGAGGACCCGAGGCTCGTACTTTCCATTCGATGGCTTCGGATGAA 475
Query 412 AACTACGTGTATGTATTCGGTGGGGTGAGCAAAGGCGGCGGGTTGATGAAAACTCCCGA- 470
||| | |||||||||||||||||||||||||||||| | | | ||||| |||||| |
Sbjct 476 AACCATGTGTATGTATTCGGTGGGGTGAGCAAAGGC-G-GTACT-ATGAATACTCCC-AC 531
Query 471 GCGGTTCAGAACGATCGAGGCGTATAACGTTGCTGATGGGAAATGGGTTCAGCTACCAGA 530
||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||| ||
Sbjct 532 GCGGTTCAGGACAATCGAGGCGTATAACATTGCTGATGGGAAATGGGCTCAGCTACCGGA 591
Query 531 TCCTGGAGAAAACTTTGAGAAAAGAGGAGGTGCGGGATTC-CTTGTGGCGCAAGGCAAGA 589
||| ||||| ||||| |||||||||||||| ||||||||| | ||||| ||||| ||||
Sbjct 592 TCCAGGAGATAACTTCGAGAAAAGAGGAGGAGCGGGATTCGC-TGTGGTACAAGGGAAGA 650
Query 590 TTTGGGTGGTATATGGGTTTGCGACTTCGAGTT-TGCCTGGAGGAAAAAG-CGACTACGA 647
|||||||||| |||||||||||||| |||| || |||| ||||| |||| ||||| ||
Sbjct 651 TTTGGGTGGTTTATGGGTTTGCGACCTCGA-TTGTGCCCGGAGG-CAAAGATGACTATGA 708
Query 648 GTCTAATGCTGTGCAATTCTTTGATCCGGC-TCTCGGAAAGTGGACAGAAGTAGAGACTA 706
|||||||||||||||||||| ||||||||| || | ||||||||| |||||||||||||
Sbjct 709 GTCTAATGCTGTGCAATTCTATGATCCGGCTTC-CAAAAAGTGGACCGAAGTAGAGACTA 767
Query 707 CAGGAGCAAAACCTTCCGCGAGGAGCGTGTTTGCACATGCAGCAGTGGGAAAACATATAA 766
||||||| ||||||||||| |||||||||||||| ||||| | ||||||||| ||||||
Sbjct 768 CAGGAGCGAAACCTTCCGCAAGGAGCGTGTTTGCCCATGCGGTAGTGGGAAAGTATATAA 827
Query 767 TAATATTTGGAGGTGAGATCTGGCCAGA-CCCAAAGGCACATTTA-GGTCCAGGGACGTT 824
||||||||| ||||||| | ||||| || | ||| || || ||| ||||| |||||| |
Sbjct 828 TAATATTTGCAGGTGAGGTATGGCCTGATCTCAATGG-GCA-TTATGGTCCCGGGACGCT 885
Query 825 GTCTAACGAAGGTTACGCGTTGAACACTGAGACATTAGTCTGGGAGAAGTTTGGAGGAGG 884
||| || || || || |||||| |||| |||||| | || ||||| ||||| |||| ||
Sbjct 886 GTCCAATGAGGGATATGCGTTGGACACCGAGACACTGGTGTGGGAAAAGTTGGGAGAAGA 945
Query 885 AGATGAACCGGAGATGCCACGCGGTTGGACTGCCTACACCACTGCCACCCTCTATGGAAA 944
|| || ||| | || ||||| |||||||||||||| || ||||||| || |||||||
Sbjct 946 AGGTGCACCAGCCATACCACGAGGTTGGACTGCCTATACTGCTGCCACTGTCGATGGAAA 1005
Query 945 GAATGGCCTCCTCATGCATGGCGGAAAGCTTCCGACCAACG-GCCGCGCTGATGATCTCT 1003
||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1006 GAATGGCCTCCTCATGCATGGCGGAAAGCTTCCGACCAACGAGC-GAACTGATGATCTCT 1064
Query 1004 ACTTCTATGCGGTCAATTCAGCTTAA 1029
||||||||||||||||||||||||||
Sbjct 1065 ACTTCTATGCGGTCAATTCAGCTTAA 1090
> AT1G54035.1 | Symbols: | pseudogene of epithiospecifier protein
| chr1:20169920-20170665 REVERSE LENGTH=538
Length=538
Score = 553 bits (299), Expect = 1e-156
Identities = 434/495 (88%), Gaps = 25/495 (5%)
Strand=Plus/Plus
Query 557 GAGGTGCGGGATTCCTTGTGGCGCAAGGCAAGATTTGGGTGGTATATGGGTTTGCGACTT 616
||||||||||||||||||||||||||| || |||||||||||| |||||||||| |||||
Sbjct 29 GAGGTGCGGGATTCCTTGTGGCGCAAGTCATGATTTGGGTGGTTTATGGGTTTGTGACTT 88
Query 617 CGAGTTTGCCTGGAGGAAAAAGCGACTACGAGTCTAATGCTGTGCAATTCTTTGATCCGG 676
| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 89 CAAGTTTGCCTGGAGGGAAAAGTGACTACGAGTCTAATGCTGTGCAATTCTTGGATCCCG 148
Query 677 CTCTCGGAAAG-TG---G--ACAGAAGTAGAGACTACAGGAGCAAAACCTTCCGCGAGGA 730
|| | |||||| || | ||||||||||||| ||| |||||||| ||||| || | ||
Sbjct 149 CTTTTGGAAAGTTGACAGACACAGAAGTAGAGAGTACGGGAGCAAAGCCTTCAGCAATGA 208
Query 731 GCGTGTTTGCACATGCAGCAGTGGGAAAACATATAATAATATTTGGAGGTGAGATCTGGC 790
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 209 GCGTGTTTGCATATGCAACAGCGGGAAAACATATAATAATATTTGGAGGTGAGATCTGGC 268
Query 791 CAGACCCAAAGGCACATT----T--AG--GTCCAGGGACGTTGTCTAACGAAGGTTACGC 842
||||||||||||||||| | || |||||||||||||||||| ||||||| | ||
Sbjct 269 GAGACCCAAAGGCACATTAAGGTCCAGCCGTCCAGGGACGTTGTCTACCGAAGGTGATGC 328
Query 843 GTTGAACACTGAGACATTAGTCTGGGAGAAGTTTGGAGGAGGAGATGAACCGGAGATGCC 902
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 329 GTTGAACACTGAGACA--AGTCTGGGAGAAGTTTGGAGGAGGAAATGAACCGGAGATGCC 386
Query 903 ACGCGGTTGGAC---TGCCTACACCACTGCCACCCTCTATGGAAAGA-ATGGCCTCCTCA 958
||| |||||||| ||||||||||||||||||| |||||||||| | | || || ||
Sbjct 387 ACGTGGTTGGACCACTGCCTACACCACTGCCACCATCTATGGAAAAAGA-GGTATCTTCG 445
Query 959 TGCATGGCGGAAAGCTTCCGACCAACGGCCGCGCTGATGATCTCTACTTCTATGC--G-- 1014
| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| | |
Sbjct 446 TACATGGCGGAAAGCTTCCGACCAACGGCCGTGCTGATGATATCTACTTCTATACATGCA 505
Query 1015 GTCAATTCAGCTTAA 1029
|||||||||||||||
Sbjct 506 GTCAATTCAGCTTAA 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5