BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337630
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55500.2 | Symbols: ECT4 | evolutionarily conserved C-termin... 2543 0.0
AT3G13460.1 | Symbols: ECT2 | evolutionarily conserved C-termin... 1112 0.0
> AT1G55500.2 | Symbols: ECT4 | evolutionarily conserved C-terminal
region 4 | chr1:20719548-20722739 FORWARD LENGTH=2322
Length=2322
Score = 2543 bits (1377), Expect = 0.0
Identities = 1623/1734 (94%), Gaps = 48/1734 (3%)
Strand=Plus/Plus
Query 20 AGACGGCTGTTTATCAGTATGGAGCTATGGATTCGAAGGGTCAAGTTCCTTCTTTTGATC 79
|||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 303 AGACGGGTGTTTACCAGTATGGAGCTATGGATTCGAATGGTCAAGTTCCTTCTTTTGATC 362
Query 80 GATCTTTGTCACCAATGCTACCCAGCGATGCCCTGGATCCTTCTGTTTTCTATGTTCCTA 139
||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 363 GATCTTTGTCACCTATGCTACCCAGTGATGCCTTGGATCCTTCTGTTTTCTATGTTCCTA 422
Query 140 ACGTGTATCAGCAGCCCTACTTTTATGGTTATGGGAGTGACTACACAGGTTATACCAATT 199
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATGTGTATCAGCAGCCCTACTATTATGGTTATGGGAGTGACTACACAGGTTATACCAATT 482
Query 200 CCGAGAGTGTTGATATGACATCAGGAGCTTACGGAGAGAACGCATCTCTTGCTTATCCAC 259
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct 483 CCGAGAGTGTTGATATGACATCAGGAGCTTACGGAGAGAATGCATCTCTTGTTTATCCGC 542
Query 260 AGGGATATGGGTATGCTACCTATCCTTACTCACCAGCAACAAGCCCTGCTCCACAACTTG 319
||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 543 AGGGATACGGGTATGCTGCCTTTCCTTACTCACCAGCAACAAGCCCTGCTCCACAACTTG 602
Query 320 GTGGTGATGGACAGTTGTATGGTGCTCAACAGTACCAGTATCCTTTTCCTCTAACAGCCA 379
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 603 GTGGTGATGGACAGTTGTATGGTGCTCAGCAGTACCAGTATCCTTTTCCTCTCACAGCCA 662
Query 380 GTAGTGGGCCTTTCGTTTCATCTGTTCCTGCCTCTACCCAAAGTAAGCTCTCTACAAACA 439
||||||||||||||| ||| ||||||||||||||||| || || ||||||||||||||||
Sbjct 663 GTAGTGGGCCTTTCGCTTCGTCTGTTCCTGCCTCTACTCAGAGCAAGCTCTCTACAAACA 722
Query 440 AAGCAGCCAACTCTGCATCTGCTGGTGCTTCGAAGGGTGGTTTCCATAAAGGAATGAATG 499
||||||||||||||||||||||| | | | | ||| ||||||||||||||
Sbjct 723 AAGCAGCCAACTCTGCATCTGCT-G-G--T---A--------TCCCTAAAGGAATGAATG 767
Query 500 GTTCAGCTCCTGTTAAACCATTG----A-A-T---C---A--G----AGTGCTCTTGGAG 541
| ||||||||||||||||||||| | | | | | | |||||||||||||
Sbjct 768 GATCAGCTCCTGTTAAACCATTGAATCAGAGTGCACTGTATGGAAACAGTGCTCTTGGAG 827
Query 542 GTGGTCTTGCTGCTGGTTATCAGGATCCCAGGTATACCTATGATGGGTTTTACAATCCCG 601
||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |
Sbjct 828 GTGGTCTTGCTGCTGGTTATCAGGACCCCAGGTATAGCTATGATGGGTTTTACACTCCTG 887
Query 602 TGTCATGGCACGATGGCTCTAACTTCTCAGATGTGCAGAGGTCTGTTTCTGCCAGTGGAG 661
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 888 TGTCATGGCACGATGGCTCTAACTTCTCAGATGTGCAGAGGTCTGTTTCTGGCAGTGGAG 947
Query 662 TTGCATCCTCATATTCTAAGGCTAACAACAATGTACCTGCGTCTAGGAATCAAAAC-CAT 720
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 948 TTGCATCCTCATATTCTAAGGCTAACAACAATGTACCTGCGACTAGGAATCAAAACTC-T 1006
Query 721 CGCTCCAATTCGCATTACACAAGTATGTACCAGCCTGCATCCATGACAGGTTATGCAGCT 780
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AGCTCCAATTCGCATTACACGAGTATGTACCAGCCTGCATCCATGACAGGTTATGCAGCT 1066
Query 781 CAGGGTTACTACGACAGAGTGTAC-CCAAACAAGTCATATGGTCAGTATGGTAGCACGGT 839
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1067 CAGGGTTACTACGACAGAGTGT-CTCCAAACAAGTCATATGGTCAGTATGGTAGCACGGT 1125
Query 840 GAGATCTGGTATGGGCTATGGTTCTTCTGGATATGATTCAAGAACAAACGAAAGAGGATG 899
||| ||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1126 GAGGTCTGGTATGGGTTATGGTTCTTCTGGATATGGTTCAAGAACAAATGAAAGAGGATG 1185
Query 900 GCTGACTACGGAAAACAAATATAGAAGCCGGGGAAGGGGTAACAGTTACTTCTATGGAAA 959
||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GCTCAATACAGACAACAAATATAGAAGCCGGGGAAGGGGTAACAGTTACTTCTATGGAAA 1245
Query 960 TGAGAACATTGATGGCCTGAATGAACTAAACAGGGGCCCTAGAGCCAAGGGCACGAAGAA 1019
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TGAGAACATTGATGGCTTGAATGAACTAAACAGGGGCCCTAGAGCCAAGGGCACGAAG-G 1304
Query 1020 CCAAAAGGACACCATAGAGGTTAGCTTAGAGGAGGTGAAAGAGCAGACGTTTGATGAATC 1079
|| ||| | ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1305 CC------ACA-GA-AGAGGTTAGCTCAGAGGAGGTGAAAAAGCAGACGTTTGATGAATC 1356
Query 1080 AAATACTGAGGAGACTGTAACATGCGTTCTTCCAGATAGAGAAGAGTACAACAGAGACGA 1139
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1357 AAATACTGAGGAGACTGTAACATGCGTTCTTCCAGATAGAGAAGAGTGCAACAGAGACGA 1416
Query 1140 TTTTCCAGTTGAGTATAAAGATGCTATGTTCTTTATCATCAAGTCGTACAGTGAAGATGA 1199
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1417 TTTTCCAGTTGAGTATAAAGATGCTAAGTTCTTTATCATCAAGTCGTACAGTGAAGATGA 1476
Query 1200 TGTGCATAAGAGCATCAAATATAATGTTTGGGCTAGCACCCCAAATGGAAACAAGAAGCT 1259
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1477 TGTGCATAAGAGCATCAAATATAATGTATGGGCTAGCACCCCAAATGGAAACAAGAAGCT 1536
Query 1260 TGCTGCTGCATATCAGGAGGCTCAGCAGAAATCTGGTGGCTGCCCTGTGTTCCTCTTCTT 1319
|| |||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1537 TGATGCTGCATATCAAGAGGCTCAGCAGAAATCTAGTGGCTGCCCTGTGTTTCTCTTCTT 1596
Query 1320 CTCGATCAACGCAAGTGGACAATTTGTTGGGCTTGCGGAAATGAAAGGACCAGTTGATTT 1379
|||| ||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1597 CTCGGTCAACGCGAGTGGACAATTTATTGGCCTTGCGGAAATGAAAGGACCAGTTGATTT 1656
Query 1380 CAACAATAATATTGAGTACTGGCAACAGGATAAGTGGACTGGCTCATTTCCCCTCAAGTG 1439
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1657 CAACAAAAATATTGAGTACTGGCAACAGGATAAATGGACTGGCTCATTTCCCCTCAAGTG 1716
Query 1440 GCATATTGTGAAGGATGTGCCCAACAGTTTGCTTAAGCATATTACTCTAGAGAACAATGA 1499
||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1717 GCATATTCTGAAGGATGTTCCCAACAGTTTGCTTAAGCATATTACTCTAGAGTACAATGA 1776
Query 1500 GAATAAACCTGTTACCAACAGTAGAGACACACAAGAGGTTAAGTTGGAGCAGGGTTTGAA 1559
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GAATAAACCTGTTACTAACAGTAGAGACACACAAGAGGTTAAGTTGGAGCAGGGTTTGAA 1836
Query 1560 GGTTGTAAAGATTTTCAAGGAGCATACCAGCAAGACATGCATTTTGGATGATTTCTCGTT 1619
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1837 GGTTGTAAAGATTTTCAAGGAGCATAACAGCAAGACATGCATTTTGGATGATTTCTCGTT 1896
Query 1620 CTACGAGGCTCGACAAAAGACTATTTTGGAGAAGAAAGCTAAGCAGCAACAATCCCAGAA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1897 CTACGAGGCTCGACAAAAGACTATTTTGGAGAAGAAAGCTAAGCAGCAACAATCCCAGAA 1956
Query 1680 GCAGGCAAGAGAAGAAA-CGGTTTGGGAAGGAAAAACCAATGATGAGAA-CCAG 1731
||||||||||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 1957 GCAGGCAAGAGAAGAAAACGGTCTGGGAAGGAAAAACCAATGATGAGAAACCAG 2010
> AT3G13460.1 | Symbols: ECT2 | evolutionarily conserved C-terminal
region 2 | chr3:4384714-4388525 REVERSE LENGTH=2869
Length=2869
Score = 1112 bits (602), Expect = 0.0
Identities = 987/1166 (85%), Gaps = 53/1166 (5%)
Strand=Plus/Plus
Query 530 GTGCTCTTGGAGGTGGTCTT-GCTGCTGGTTATCAGGATCCCAGGTATACCTATGATGGG 588
|||||| ||||| ||| || ||||||||||||||||| ||||||||| ||||||| |||
Sbjct 988 GTGCTCCAGGAGGAGGT-TTGGCTGCTGGTTATCAGGACCCCAGGTATGCCTATGAAGGG 1046
Query 589 TTTTACAATCCCGTGTCATGGCACGATGGCTCTAACTTCTCAGATGTGCAGAGGTCTGTT 648
| ||| ||| ||| | ||||||||||||||||| | ||| ||||||||||| |||||
Sbjct 1047 TATTATGCTCCTGTGCCGTGGCACGATGGCTCTAAGTACTCTGATGTGCAGAGACCTGTT 1106
Query 649 TCTGCCAGTGGAGTTGCATCCTCATATTCTAAGGCTAACAACAATGTACCTGCGTCTAGG 708
|||| ||||||||||||||||| ||||||||| ||| | || | |||||| | || |||
Sbjct 1107 TCTGGTAGTGGAGTTGCATCCTCCTATTCTAAGTCTAGC-AC-A-GTACCTTCATCGAGG 1163
Query 709 AATCAAAACCATCGCTCCAATTCGCATTACACAAGTATGTACCAGCCTGCATCCA-TGAC 767
||||||||| | ||||| ||||| || ||||| || || |||||||| ||| || ||||
Sbjct 1164 AATCAAAACTACCGCTCAAATTCTCACTACACGAGCGTGCACCAGCCTTCAT-CAGTGAC 1222
Query 768 AGGTTAT-G--CAGCTCAGGGTTACTACGACA-GAGTGTACCCA-AACAAGTCATATGGT 822
|| ||| | |||||||||| |||||| ||| || |||| || ||||||| |||||||
Sbjct 1223 TGGCTATGGTACAGCTCAGGGGTACTACAACAGGA-TGTA-TCAGAACAAGTTATATGGT 1280
Query 823 CAGTATGGTAGCAC-GGTGAGATCTGGTATGGGCTATGGTTCTTCTGGATATGATTCAAG 881
|||||||||||||| || |||||||| | |||| |||||||| ||||| |||||||||||
Sbjct 1281 CAGTATGGTAGCACAGG-GAGATCTGCTTTGGGTTATGGTTCATCTGGGTATGATTCAAG 1339
Query 882 AACAAACGAAAGAGGAT-GGCTGACTACGGAAAACAAATATAGAAGCCGGGGAAGGGGTA 940
|||||| | |||||||| ||| | | || || |||||||| |||||| |||| |||||||
Sbjct 1340 AACAAATGGAAGAGGATGGGC-GGCCACAGACAACAAATACAGAAGCTGGGGCAGGGGTA 1398
Query 941 ACAGTTACT-TCTATGGAAATGAGAAC-AT-T-GATGGCCTGAATGAACTAAACAGGGGC 996
||||||||| | || |||||||||||| || | ||||| |||||||||| ||||||||
Sbjct 1399 ACAGTTACTAT-TACGGAAATGAGAACAATGTAGATGGTTTGAATGAACTTAACAGGGGA 1457
Query 997 CCTAGAGCCAAGGGCACGAAGAACCA-AAAGGACACCATAGAGGTTAGCTTAGAGGAGGT 1055
|||||||| |||||||| |||||||| || ||| | | |||| | |||||| | |||||
Sbjct 1458 CCTAGAGCTAAGGGCACAAAGAACCAGAAGGGAAATC-TAGATGATAGCTT--A-GAGGT 1513
Query 1056 GAAAGAGCAGACGTTTGATGAATCAAA--T-ACTGA------GGAGACTG-T-A-ACATG 1103
|| |||||||| | || |||||||| | ||||| |||| | | | | |||||
Sbjct 1514 TAAGGAGCAGAC--TGGA-GAATCAAATGTAACTGAGGTTGGGGAGGCGGATAACACATG 1570
Query 1104 CGTTCTTCCAGATAGAGAAGAGTACAACAGAGACGATTTTCCAGTTGAGTAT-AAAGATG 1162
||| |||| || |||||| ||||||| | ||| ||||| ||||| || ||| || |||
Sbjct 1571 TGTTGTTCCTGACAGAGAACAGTACAATAAAGAAGATTTCCCAGTGGATTATGCAA-ATG 1629
Query 1163 CTATGTTCTTTATCATCAAGTCGTACAGTGAAGATGATGTGCATAAGAGCATCAAATATA 1222
| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 1630 CCATGTTCTTTATCATCAAGTCATACAGTGAAGATGATGTGCACAAGAGCATTAAATATA 1689
Query 1223 ATGTTTGGGCTAGCACCCCAAATGGAAACAAGAAGCTTGCTGCTGCATATCAGGAGGCTC 1282
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1690 ATGTTTGGGCTAGCACACCAAATGGAAACAAGAAGCTTGCTGCAGCATACCAGGAAGCTC 1749
Query 1283 AGCAGAAATCTGGTGGCTG-CCCTGTGTTCCTCTTCTTCTCGATCAACGCAAGTGGACAA 1341
| |||||| |||| ||||| ||| | || || || |||||| |||| ||||||||||||
Sbjct 1750 AACAGAAAGCTGGCGGCTGTCCC-ATCTTTCTGTTTTTCTCGGTCAATGCAAGTGGACAA 1808
Query 1342 TTTGTTGGGCTTGCGGAAATGAAAGGACCAGTTGATTTCAACA-ATAATATTGAGTACTG 1400
|||||||| ||||| ||||||| |||||||||||||||||||| | ||| | ||||||||
Sbjct 1809 TTTGTTGGTCTTGCTGAAATGACAGGACCAGTTGATTTCAACACA-AATGTGGAGTACTG 1867
Query 1401 GCAACAGGATAAGTGGACTGGCTCATTT-CCCCTCAAGTGGCATATTGTGAAGGATGTGC 1459
||| || ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1868 GCAGCAAGATAAGTGGACCGGCTC-TTTCCCCCTCAAGTGGCATATTGTGAAGGATGTGC 1926
Query 1460 CCAACAGTTTGCTTAAGCATATTACTCTAGAGAACAATGAGAATAAACCTGTTACCAACA 1519
| |||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1927 CAAACAGTTTACTGAAGCATATTACTTTAGAGAACAATGAGAACAAACCTGTTACCAACA 1986
Query 1520 GTAGAGACACACAAGAGGTTAAGTTGGAGCAGGGTTTGAAGGTTGT-AAAGATTTTCAAG 1578
| ||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||
Sbjct 1987 GCAGAGACACACAAGAGGTTAAGTTGGAGCAAGGTTTGAAGATTGTGAAA-ATTTTCAAG 2045
Query 1579 GAGCATACCAGCAAGACATGCATTTTGGATGATTTCTCGTTCTACGAGGCTCGACAAAAG 1638
||||||| ||||||||| |||||||||||||||||||| |||||||||| |||||| |||
Sbjct 2046 GAGCATAGCAGCAAGACTTGCATTTTGGATGATTTCTCATTCTACGAGGTTCGACAGAAG 2105
Query 1639 ACTATTTTGGAGAAGAAAGCTAAGCA 1664
||||| |||||||||||||| |||||
Sbjct 2106 ACTATCTTGGAGAAGAAAGCCAAGCA 2131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5