BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337633
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55530.1 | Symbols: | RING/U-box superfamily protein | chr1... 1520 0.0
> AT1G55530.1 | Symbols: | RING/U-box superfamily protein | chr1:20729182-20731283
REVERSE LENGTH=1650
Length=1650
Score = 1520 bits (823), Expect = 0.0
Identities = 985/1060 (93%), Gaps = 23/1060 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGAAGCAATTGCAACGAGGTATTGGTGTCACATGTGCTCTCAAACTGTGGATCCA 60
|||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 305 ATGGAAGAAGCAGTTGTAACGAGGTATTGGTGTCATATGTGTTCTCAAACTGTGAATCCA 364
Query 61 GTCATGGAAGCTGAGATCAAATGCCCCTTTTGTCAAAGTGGGTTTGTTGAAGAGATGG-A 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 365 GTCATGGAAGCTGAGATCAAATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATGGAA 424
Query 120 -A-GACGACGATCATGATTCTTCTGATCCGGCTGATGTTAGAGCTAACAACTCTCTTTGG 177
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 425 GATGACGACGATCATGATTCTTCTGATCCGGCTGATGTTAGAGCAAACAACTCTCTTTGG 484
Query 178 GCTCCTATCTTGATGGAACTTATGACTGATCCTGTGCGCCGTAGGAGAAACCAGAGTGTT 237
|| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 485 GCGCCTATCTTGATGGAACTTATGAATGATCCTGTGCGTCGTAGGAGAAACCAGAGTGTT 544
Query 238 GAGTCTGTTGAAGATAATCAAAACGAGGCACAGACCGAGAGTAATGAAAACAACGGTGAA 297
|||||||||||||||||||||||||||| ||||||||||| |||| || ||| || |
Sbjct 545 GAGTCTGTTGAAGATAATCAAAACGAGGTACAGACCGAGAACAATG--AA-GACGATGGA 601
Query 298 GAAAATGATTTGGATTGGCAGCTTCAAGAGATTCTCAGGAGAAGGAGAAGACATTCTGCT 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 602 GAAAATGATTTGGATTGGCAGCTTCAAGAGATTCTCAGGAGAAGGAGAAGACATTCCGCT 661
Query 358 GCTGTTTTGCAATTGCTTCAGGGGATACGAGCTGGCTTGTCTGTAGAATCTGAGAGTACT 417
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 662 GCTGTTTTGCAGTTGCTTCAGGGGATACGAGCAGGGTTGTCTGTAGAATCTGAGAGTACT 721
Query 418 GGTAATGGAGATAATAATCCGGGACGGGTGATCTTGATCAATACCTCCAATCAGACTATC 477
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GGTAATGGAGGTAATAATCCGGGACGGGTGATCTTGATCAATACCTCCAATCAGACTATC 781
Query 478 ACGGTTCAAAGCTCTGCTGATATGGATTCTGTACCTGCTGGTTCTTTAGGTGACTATTTC 537
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 ACGGTTCAAAACTCTGCTGATATGGATTCTGTACCTGCTGGTTCTTTAGGTGACTATTTC 841
Query 538 ATTGGGCCTGGATTTGAAATGTTGCTTCAGCGTCTAGCTGAGAATGATCCCAACAGATAT 597
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 842 ATTGGTCCTGGATTTGAAATGTTGCTTCAACGTCTAGCTGAGAATGATCCCAACAGATAT 901
Query 598 GGGACACCTCCAGCTAAAAAAGAAGCTGTTGAGGCTTTGGGTACTGTGAAAATTGAAGAG 657
|| |||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 902 GGAACACCTCCTGCTAAAAAAGAAGCTGTCGAGGCTTTGGCTACTGTGAAAATCGAAGAG 961
Query 658 ACTCTGCAGTGTTCGGTTTGCTTAGATGATTTTGAGATTGGAACTGAGGCAAAGCGGATG 717
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 962 ACTCTGCAATGTTCGGTTTGTTTAGATGATTTTGAGATTGGAACTGAGGCAAAGCTGATG 1021
Query 718 CCCTGTGA-GCACAAGTTTCATGGTGACTGCCTGTTACCATGGCTTGAGCTTCACAGTTC 776
|||||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1022 CCCTGT-ACGCACAAGTTTCATAGTGACTGCTTGTTACCATGGCTTGAGCTTCACAGTTC 1080
Query 777 ATGCCCTGTTTGCAGATATCAGTTACCTGCAGATGAACCCAAGACTGACTCAGTAACAAC 836
|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1081 ATGCCCGGTTTGCAGATATCAGTTACCTGCAGATGAAGCCAAGACTGATTCAGTAACAAC 1140
Query 837 AACAAGTGATAACAATGGAGGCAGTGGTGCTCCTGCTACAAGCAGCCATGGAGCTGAGAA 896
||| || |||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 1141 AACGAGCGATAACAATGGAAGCAGTAGTGCTTCTGCTACAACCAGCCATGGAGCTGAGAA 1200
Query 897 CAGC-A-GG---C-G-C-C-AAG--GA-GAAGAAGAAGA-G--GAGGACGCGGAGGAGGA 941
|||| | || | | | | ||| || ||||||||||| | ||||| | |||||||||
Sbjct 1201 CAGCGATGGAAACCGGCGCCAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGA 1260
Query 942 GAACGAGGACAATGATGGAAGCGGATTCTCGATCCCATGGCCGTTTAGCACTTTGTTCAC 1001
||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 1261 GAACGAGAACAATGACGGAAGCGGATTCTCGATCCCGTGGCCGTTTAGCACCTTGTTCTC 1320
Query 1002 CTCGTCCCAAGATAGCAATGCACCAACGGATTCTAGTTAA 1041
|||||| |||||||||||||||||||||||||||||||||
Sbjct 1321 CTCGTCGCAAGATAGCAATGCACCAACGGATTCTAGTTAA 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5