BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg337636

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17330.1 | Symbols: ATG2484-1, G2484-1 | G2484-1 protein | c...  52.8    3e-06


> AT4G17330.1 | Symbols: ATG2484-1, G2484-1 | G2484-1 protein | 
chr4:9688888-9697578 REVERSE LENGTH=6499
Length=6499

 Score = 52.8 bits (28),  Expect = 3e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  34    GATGGCCAGGAAGAGGATAATACTGCTG  61
             ||||||||||||||||||||||||||||
Sbjct  2190  GATGGCCAGGAAGAGGATAATACTGCTG  2217



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5