BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337643
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55600.1 | Symbols: WRKY10, ATWRKY10, MINI3 | WRKY DNA-bindi... 987 0.0
> AT1G55600.1 | Symbols: WRKY10, ATWRKY10, MINI3 | WRKY DNA-binding
protein 10 | chr1:20774046-20776294 REVERSE LENGTH=1462
Length=1462
Score = 987 bits (534), Expect = 0.0
Identities = 782/896 (87%), Gaps = 40/896 (4%)
Strand=Plus/Plus
Query 625 GTTGACCCAATTGGAACTCCTTTAGTCGCTTCCTTTGAATCTGAACTCGGTGACGATGCC 684
||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 572 GTTGACCCAATTGGAACTCCTTTAGTCACATCCTTTGAATCTGAACTCGTTGACGATGCC 631
Query 685 CATATCGACATCATTTCCATTGAAGACAGTGAGAGCGAAAATGAAAACAAAGATGAAGAC 744
|||| ||||||||| |||||||| |||||||||||||| ||| |||||||||||| |||
Sbjct 632 CATACCGACATCATCTCCATTGAGGACAGTGAGAGCGAGGATGGAAACAAAGATGATGAC 691
Query 745 GACGAGGAATACCAATTCGATTACGAAGACGAAGACC-A-A-GGCCAAGACCAAGATGTA 801
|||||||| | ||||| ||| ||||||||||||||| | | | |||||| |||||||||
Sbjct 692 GACGAGGACTTCCAATACGAAGACGAAGACGAAGACCAATACGACCAAGATCAAGATGTA 751
Query 802 TATCTAGATGAAGAGGAAGAGGAAGATGAAGACAATGTTGCATTAGATGATGCTCAACCT 861
|| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 752 GATGAAGATGAAGAGGAAGAAAAAGATGAAGACAATGTTGCATTAGATGATCCTCAACCT 811
Query 862 TCGTCTCGAAAGAGAAGGAGATTTGATCAGGCATCAAACAAT-ATTGGAGCCACAAGAAC 920
| ||| ||||||||||||| | || ||| ||||||| || |||||||||||||||||
Sbjct 812 CCACCTCCAAAGAGAAGGAGA--T-ATGAGGTATCAAAC-ATGATTGGAGCCACAAGAAC 867
Query 921 AAGCAAGACACAAAGGGTCATACTTCAAATGGAAACCGACGAAGACAATCCTAATGATGG 980
|||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |||||
Sbjct 868 AAGCAAGACACAAAGGATCATACTTCAGATGGAAAGCGACGAAGACAATCCTAACGATGG 927
Query 981 TTATCGCTGGAGAAAATACGGTCAGAAAGTCGTCAAAGGAAATCCTAATCCGAGGAGTTA 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 TTATCGCTGGAGAAAATACGGTCAGAAAGTCGTCAAAGGAAATCCTAATCCGAGGAGTTA 987
Query 1041 CTACAAATGCACAAACAAT-GAATGCAAAGTGAAGAAACATGTGGAGAGAGGAGCAGACA 1099
|| ||| |||||||||| | || |||| |||||| |||||||||||||||||||||||||
Sbjct 988 CTTCAAGTGCACAAACA-TCGAGTGCAGAGTGAAAAAACATGTGGAGAGAGGAGCAGACA 1046
Query 1100 ACAAT-AAGTTAGTTGTGACTACATACGATGGGATACACAACCATCCTTCACCACCTGCA 1158
| | | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 ATA-TCAAGTTGGTTGTGACTACATACGATGGGATACACAACCATCCTTCACCACCTGCA 1105
Query 1159 CGTAGAAGCAATACCGGTTCAAGGAATCGGTCTGCAGGTACAACAATGTCTCAAAATCAG 1218
|||||||||||| || |||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 1106 CGTAGAAGCAATTCCAGTTCAAGGAACCGGTCTGCAGGGGCAACAATACCTCAAAATCAG 1165
Query 1219 G-TAGATCAAACCAGTCGGTTAGCTAGGGCTCCTCCT-C-C-T--TCGTC-T-C------ 1264
| |||| |||||||||||||| ||||||||||||| | | | || || | |
Sbjct 1166 AAT-GATCGAACCAGTCGGTTAGGTAGGGCTCCTCCTACTCCTACTCCTCCTACTCCTCC 1224
Query 1265 ------G-C--ACAC-C-TGTGGAGATGAGGCCTTTCTCTTCGATGGCTCCACAAGTTGA 1313
| | |||| | || |||||||||||||||||||||| ||||| || || ||||
Sbjct 1225 TCCTTCGTCTTACACACCTGAGGAGATGAGGCCTTTCTCTTCGTTGGCTACAGAAATTGA 1284
Query 1314 TCTGACACAGGTTTATACGACCGGAATCTCTAAGCTGCCGAATGTACCAGTTTACCAGAA 1373
||||||| ||||||||| |||||||||||||| |||||||||| |||| |||||| ||||
Sbjct 1285 TCTGACAGAGGTTTATATGACCGGAATCTCTATGCTGCCGAATATACCGGTTTACGAGAA 1344
Query 1374 TCCGGGTTTTATGTACCGGACTGATGAACCGATGATGAATGTGATGCCGGATGGTGCAGA 1433
| ||||||||||||||| || ||||||||||| |||||||| ||||||||||||| ||||
Sbjct 1345 TTCGGGTTTTATGTACCAGAATGATGAACCGACGATGAATGCGATGCCGGATGGTTCAGA 1404
Query 1434 TGTGTACGGTGGGATCAAGCATCGCCTAT-TTGTTAAGTTTGGTGTCGACATTTAG 1488
|||||||| |||||||| | | ||||| | || ||||||||||||||||||| |||
Sbjct 1405 TGTGTACGATGGGATCATGGAACGCCTGTATT-TTAAGTTTGGTGTCGACATGTAG 1459
Score = 869 bits (470), Expect = 0.0
Identities = 585/639 (92%), Gaps = 13/639 (2%)
Strand=Plus/Plus
Query 1 ATGAGTGATTTTGATGGAAACTTCATAGAAATGACGTCGTATTGGGCTCCACCGTCCAGC 60
|||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2 ATGAGTGATTTTGATGAAAACTTCATCGAAATGACGTCGTATTGGGCTCCACCATCCAGT 61
Query 61 CCTAGCCCAAGAACGATATTGGCGATGCTGGAGCAAACCGACAATGGTATGAATCCGATA 120
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 62 CCTAGCCCAAGAACGATATTGGCAATGCTGGAGCAAACCGACAATGGTCTGAATCCAATC 121
Query 121 AGTGAGATCTTCCCTCAAACCAA-CATACCAAGAGATCATGATACTGATCAGTCCGGACA 179
|||||||||||||||| || || | | |||||||||| |||||||||| || |||||
Sbjct 122 AGTGAGATCTTCCCTC-AAGAAAGCTTGCCAAGAGATC---ATACTGATCAATCTGGACA 177
Query 180 AAGATCTGGTCTCCGTGAGAGATTAGCTGCAAGAATAGGATTCAGTCTTCCAACACTCGA 239
|||||||||||| ||||||||| | ||||||||| ||||||||| ||||||||||||| |
Sbjct 178 AAGATCTGGTCTTCGTGAGAGACTGGCTGCAAGAGTAGGATTCAATCTTCCAACACTCAA 237
Query 240 TAC---AGAAAACATGAGTCCTTTGGATGCATTTTTCAGGAGCTCGACTGTTCCCAATTC 296
||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 238 TACAGAAGAAAACATGAGTCCTTTGGATGCATTTTTCAGGAGCTCGAATGTTCCTAATTC 297
Query 297 TCCTGTCGTTGCAATCTCTCCAGGATTTAGCCCATCAGCACTATTGCA-ATCTCCCAATA 355
||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||||
Sbjct 298 TCCTGTCGTTGCAATCTCTCCAGGATTCAGTCCATCAGCACTATTGCATA-CTCCCAATA 356
Query 356 CGGTCAGTGATTCTTCACAGATTATCCCTCCGTCTCCAGCCACCAATTACGGACCTCCGG 415
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
Sbjct 357 TGGTCAGTGATTCTTCCCAGATTATCCCTCCGTCTTCAGCCACCAATTACGGACCTCTAG 416
Query 416 AGATGGTGGAAACTTCCGGTGAAGACAATGCAATGACGATGGTATTCAACAATGATCTTC 475
|||||||||||||||||||||||||||||||| || |||| | |||||||| |||||||
Sbjct 417 AGATGGTGGAAACTTCCGGTGAAGACAATGCAGCGATGATGATGTTCAACAACGATCTTC 476
Query 476 CTTATCAGCCGTACAATGTTGATCTGCCTCCTCTAGAAGTCTTTGATGATATTCCAACGG 535
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 477 CTTATCAGCCGTACAATGTTGATCTGCCTTCTCTAGAAGTCTTTGATGATATTGCAACGG 536
Query 536 AAGAGTCCTTTTATATCCCATCTTATGAACCTGATGTTGACCCAATTGGAACTCCTTTAG 595
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 AAGAGTCCTTTTATATCCCATCTTATGAACCTCATGTTGACCCAATTGGAACTCCTTTAG 596
Query 596 TCGCTTCCTTTGAATCTGAACTCAGT-GACGTTGACCCA 633
|| | |||||||||||||||||| || |||| || ||||
Sbjct 597 TCACATCCTTTGAATCTGAACTC-GTTGACGATG-CCCA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5