BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg337656 Length=603 Score E Sequences producing significant alignments: (Bits) Value AT3G13230.1 | Symbols: | RNA-binding KH domain-containing prot... 375 2e-103 > AT3G13230.1 | Symbols: | RNA-binding KH domain-containing protein | chr3:4269978-4271204 FORWARD LENGTH=891 Length=891 Score = 375 bits (203), Expect = 2e-103 Identities = 304/353 (86%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 238 AAGTCTGCGGATTTCGTACACGCTTTCATGCTCGGTTTCGATATCCCCGACGCTATTTCT 297 |||||||||||||| ||||||||||||||||| ||||| |||||||| || ||||| ||| Sbjct 398 AAGTCTGCGGATTTTGTACACGCTTTCATGCTTGGTTTTGATATCCCTGATGCTATCTCT 457 Query 298 CTTCTGCGAATGGATGAACTGTATGTTGAGTCTTTTGAGATCAAGGATGTGAAGACTCTT 357 ||| || ||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 458 CTTTTGAGAATGGACGAGCTTTATGTTGAGTCTTTTGAGATCAAGGATGTGAAGACTCTT 517 Query 358 AAAGGCAAGCATCTGTCCCGAGCTATCAGTAGATTGTCTGGGAAAGGAGGAAAGACGAAG 417 ||||| ||||| |||| |||| || |||| |||||||| |||||||| ||||| ||| Sbjct 518 AAAGGTGAGCATTTGTCTAGAGCCATTGGTAGGTTGTCTGGTAAAGGAGGGAAGACAAAG 577 Query 418 TTTGCTATTGAGAATTCTACAAAGACAAGGATTGTGATTGCAGACACAAAGATTCATATC 477 |||||||||||||| || || ||||| |||||||||||||||||||| | ||||||||| Sbjct 578 TTTGCTATTGAGAACTCGACCAAGACGAGGATTGTGATTGCAGACACTAGGATTCATATT 637 Query 478 TTAGGAGCTTTCTCTAACAGTAAAGTCGCGAGG-GCTTCG-TTGTGCGGTCTTATTATGG 535 || |||||||||||||| | ||||||||| ||| | ||| || ||| |||||||||||| Sbjct 638 TTGGGAGCTTTCTCTAATATTAAAGTCGCAAGGAG-TTCACTT-TGCAGTCTTATTATGG 695 Query 536 GATCTCCAGCTGGTAAGGTTTACTCCAAGCTCCGAGCAGTCTCTG-TCAGATT 587 ||||||| ||||| || |||||||| |||||| || | ||||||| | ||||| Sbjct 696 GATCTCCTGCTGGGAAAGTTTACTCTAAGCTCAGATCTGTCTCTGCT-AGATT 747 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29035336966 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5