BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg337656

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13230.1 | Symbols:  | RNA-binding KH domain-containing prot...   375    2e-103


> AT3G13230.1 | Symbols:  | RNA-binding KH domain-containing protein 
| chr3:4269978-4271204 FORWARD LENGTH=891
Length=891

 Score =  375 bits (203),  Expect = 2e-103
 Identities = 304/353 (86%), Gaps = 6/353 (2%)
 Strand=Plus/Plus

Query  238  AAGTCTGCGGATTTCGTACACGCTTTCATGCTCGGTTTCGATATCCCCGACGCTATTTCT  297
            |||||||||||||| ||||||||||||||||| ||||| |||||||| || ||||| |||
Sbjct  398  AAGTCTGCGGATTTTGTACACGCTTTCATGCTTGGTTTTGATATCCCTGATGCTATCTCT  457

Query  298  CTTCTGCGAATGGATGAACTGTATGTTGAGTCTTTTGAGATCAAGGATGTGAAGACTCTT  357
            ||| || ||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct  458  CTTTTGAGAATGGACGAGCTTTATGTTGAGTCTTTTGAGATCAAGGATGTGAAGACTCTT  517

Query  358  AAAGGCAAGCATCTGTCCCGAGCTATCAGTAGATTGTCTGGGAAAGGAGGAAAGACGAAG  417
            |||||  ||||| ||||  |||| ||  |||| |||||||| |||||||| ||||| |||
Sbjct  518  AAAGGTGAGCATTTGTCTAGAGCCATTGGTAGGTTGTCTGGTAAAGGAGGGAAGACAAAG  577

Query  418  TTTGCTATTGAGAATTCTACAAAGACAAGGATTGTGATTGCAGACACAAAGATTCATATC  477
            |||||||||||||| || || ||||| |||||||||||||||||||| | ||||||||| 
Sbjct  578  TTTGCTATTGAGAACTCGACCAAGACGAGGATTGTGATTGCAGACACTAGGATTCATATT  637

Query  478  TTAGGAGCTTTCTCTAACAGTAAAGTCGCGAGG-GCTTCG-TTGTGCGGTCTTATTATGG  535
            || |||||||||||||| | ||||||||| ||| | |||  || ||| ||||||||||||
Sbjct  638  TTGGGAGCTTTCTCTAATATTAAAGTCGCAAGGAG-TTCACTT-TGCAGTCTTATTATGG  695

Query  536  GATCTCCAGCTGGTAAGGTTTACTCCAAGCTCCGAGCAGTCTCTG-TCAGATT  587
            ||||||| ||||| || |||||||| |||||| || | ||||||| | |||||
Sbjct  696  GATCTCCTGCTGGGAAAGTTTACTCTAAGCTCAGATCTGTCTCTGCT-AGATT  747



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29035336966


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5