BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337666
Length=2184
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55850.1 | Symbols: ATCSLE1, CSLE1 | cellulose synthase like... 3064 0.0
> AT1G55850.1 | Symbols: ATCSLE1, CSLE1 | cellulose synthase like
E1 | chr1:20876699-20879482 FORWARD LENGTH=2311
Length=2311
Score = 3064 bits (1659), Expect = 0.0
Identities = 2030/2206 (92%), Gaps = 38/2206 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAACGAAGACGACCGGGTTAGACCGGTTCATGAAGGCGACGGTGAACCGCTTTTC 60
|||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 54 ATGGTAAACAAAGACGACCGGATTAGACCGGTTCATGAAGCCGACGGTGAACCGCTTTTT 113
Query 61 GAGACCAGGAGGAGAACCGGAAGAGTGATTGCGTACCGGATTTTCTCAGCTTCGGTTTTC 120
||||| ||||| |||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 114 GAGACTAGGAGAAGAACCGGTAGAGTGATTGCGTACCGGTTTTTCTCAGCCTCGGTTTTC 173
Query 121 GGGTGTATTTGTTTGATTTGGTTCTATAGGATGACCGTACCAGTAGAGATTGGTGAGAAC 180
| |||||| ||||||||||||||||| | || | | || ||||||||||| |||
Sbjct 174 GTGTGTATCTGTTTGATTTGGTTCTACA-GA--A---T--TGGT-GAGATTGGTGATAAC 224
Query 181 CGGACCGGTTTGGATCGATTGATATCGTTGGTTATGTTGGTGGTGGAGATTTGGTTCGGT 240
|| |||| ||| |||||||| || | ||| |||||||| | ||||||||||||||||||
Sbjct 225 CGTACCGTTTTAGATCGATTAATCTGGTTTGTTATGTTTATTGTGGAGATTTGGTTCGGT 284
Query 241 TTCTATTGGGTAGTCACACAAGCTTCCCGGTGGAATCCGGTTTGGCG-TTTCACCTTCTC 299
|| |||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||
Sbjct 285 TTATATTGGGTAGTCACACAATCTTCCCGGTGGAATCCGGTTTGGCGATTTC-CCTTCTC 343
Query 300 CGATAGACTCTCCCGGAGATACGGAAACGATCTTCCGAAGCTCGACGTTTTCGTTTGCAC 359
|||||||||||| ||||||||||||| ||| ||||||| ||||||||| |||||||||||
Sbjct 344 CGATAGACTCTCTCGGAGATACGGAAGCGACCTTCCGAGGCTCGACGTCTTCGTTTGCAC 403
Query 360 GGCGGATCCGGTGATTGAGCCGCCGTTGTTGGTTGTCAACACAGTCTTATCTGTCG-CGG 418
||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||
Sbjct 404 GGCGGATCCGGTGATTGAGCCGCCGTTGTTGGTGGTAAACACAGTCTTATCTGT-GACGG 462
Query 419 CTCTTGACTATCCAGCGGAGAAACTCGCCGTGTATCTCTCAGATGACGGTGGTTCTGAGC 478
|||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 463 CTCTTGACTACCCACCGGAGAAACTCGCCGTTTATCTCTCAGATGACGGTGGTTCTGAGC 522
Query 479 TGACGTTCTATGCTCTCACGGAGGCGGCTGAGTTTGCTAAAACTTGGGTTCCCTTCTGCA 538
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 523 TGACGTTCTATGCTCTCACGGAGGCAGCTGAGTTTGCTAAAACTTGGGTTCCCTTCTGCA 582
Query 539 AG-AGATTCAACGTCGAGCCAACATCTCCGGCCGCTTACTTGTCTTCCAAGGCAAA-TGG 596
|| || |||||||| |||||||||||||| || ||||||||||||||||||||||| | |
Sbjct 583 AGAAG-TTCAACGTTGAGCCAACATCTCCCGCTGCTTACTTGTCTTCCAAGGCAAACT-G 640
Query 597 TCTTGATTCTACGGCTGAGGAGGTGGCTAAAATGTATAAAGAAATGGCGGTGAGGATTGA 656
|||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||
Sbjct 641 TCTTGATTCTGCGGCTGAGGAGGTGGCTAAGCTGTATAGAGAAATGGCGGCGAGGATTGA 700
Query 657 AACGGCGGCGAGACTCGGACGAGTACCGGAGGAGGCGCGGTTGAAGTACGGTGACGGGTT 716
||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 701 AACGGCGGCGAGACTGGGACGAATACCGGAGGAGGCGCGGGTGAAGTACGGTGACGGGTT 760
Query 717 TTCTCAGTGGGATGCTGACGCTACTCGTAGAAACCATGGAACCATTCTTCAAATTTTGGT 776
||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 761 TTCACAGTGGGATGCTGACGCTACTCGAAGAAACCATGGAACCATTCTTCAAGTTTTGGT 820
Query 777 AGACGGAAGAGAAGAAAATGA-AATAGCAATACCAACGTTGGTGTATTTATCGAGAGAGA 835
||| |||||||||| ||| | |||||||||||||||||||||||||||||| ||||| |
Sbjct 821 AGATGGAAGAGAAGGGAAT-ACAATAGCAATACCAACGTTGGTGTATTTATCAAGAGAAA 879
Query 836 AGAGACCTCAACATCATCATAACTTTAAGGCTGGAGCCATGAACGCATTGCTGAGGGTTT 895
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 880 AGAGACCTCAACATCATCATAACTTCAAGGCTGGAGCAATGAACGCATTGCTGAGGGTTT 939
Query 896 CTTCGAAGATCACCGGTGGGAGAATCATACTAAACTTGGACTGTGATATGTACGCAAACA 955
||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 940 CTTCGAAAATTACTTGTGGGAAAATCATACTAAACTTGGACTGTGATATGTACGCAAACA 999
Query 956 ACTCAAAGTCAGCACGCGACGCCCTCTGCATCCTCCTTGATGAGAAAGAGGGAAAAGAGA 1015
||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1000 ACTCAAAGTCAACACGCGACGCGCTCTGCATCCTCCTCGATGAGAAAGAGGGAAAAGAGA 1059
Query 1016 TTGCTTTCGTGCAGTTTCCGCAGTGTTTTGACAACGTTACAAGAAATGATTTGTATGGAA 1075
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1060 TTGCTTTCGTGCAGTTTCCGCAGTGTTTTGACAATGTTACAAGAAATGATTTGTATGGAA 1119
Query 1076 GCATGATGCGAGCAATAGCAGATGTGGACTTTCTTGGACTGGATGGAAATGGTGGTCCGT 1135
|||||||||||| | | |||||||| ||||||||| |||||||||||||||||||||
Sbjct 1120 GCATGATGCGAGTAGGAATTGATGTGGAATTTCTTGGATTGGATGGAAATGGTGGTCCGT 1179
Query 1136 TGTACATTGGAACTGGCTGCTTTCACAGAAGAGATGTGATCTGTGGAAGAAAGTACGGAG 1195
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1180 TATACATTGGAACTGGATGCTTTCACAGAAGAGATGTGATCTGTGGAAGAAAGTATGGAG 1239
Query 1196 AGGAAGAAGAAGAA------TCTGAGAGAATTCA--A-------GAGCCTGAGATGATTA 1240
|||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 1240 AGGAAGAAGAAGAAGAAGAATCTGAGAGAATTCACGAAAATTTAGAGCCTGAGATGATTA 1299
Query 1241 AGGCTCTTGCGAGCTGCACTTATGAGGAAAACAGTCAATGGGGAAAGGAGATAGGTGTGA 1300
||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1300 AGGCTCTCGCGAGCTGCACTTATGAGGAAAACACTCAATGGGGAAAGGAGATGGGTGTGA 1359
Query 1301 AATACGGTTGCCCGGTAGAGGATGTAATAACTGGATTGACGATTCAGTGTCGCGGATGGA 1360
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1360 AATATGGTTGCCCGGTAGAGGATGTAATAACTGGTTTGACGATTCAGTGTCGCGGATGGA 1419
Query 1361 AATCAGCATACTTGAACCCGGGAAATAAAGCTTTTGTCGGGGTAGCGCCGACTAATTTGC 1420
||||||| ||| ||||||||| ||| |||| ||| |||||||||||||||| |||||||
Sbjct 1420 AATCAGCCTACCTGAACCCGGAAAAGCAAGCATTTCTCGGGGTAGCGCCGACCAATTTGC 1479
Query 1421 ATCAAATGCTTGTGCAGCAGAGGAGATGGTCAGAGGGAGACTTTCAGATTCTGCTTTCAG 1480
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1480 ATCAAATGCTAGTGCAGCAGAGGAGATGGTCAGAGGGAGACTTTCAGATTATGCTTTC-G 1538
Query 1481 A-GTATAGTCCGGTTTGGTATGGAAAAGGAAAGATCGGTTTAGGACTGATACTTGGTTAC 1539
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1539 AAGTATAGTCCGGTTTGGTATGGAAAAGGAAAGATCAGTTTAGGACTGATACTTGGTTAC 1598
Query 1540 TGTTGCTATTGCCTTTGGGCTCCATCTTCAGTACCTGTGCTTATTTACTCTGTTTTGACT 1599
||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1599 TGTTGCTATTGTCTTTGGGCTCCATCTTCACTACCTGTGCTCATTTACTCTGTTTTGACT 1658
Query 1600 TCTCTCTGCCTCTTCAAAGGCATTCCTCTGTTTCCAAAGGTCTCGAGTTTGTGGTTTATC 1659
|||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1659 TCTCTCTGTCTCTTCAAAGGCATTCCTCTGTTTCCAAAGGTCTCGAGCTCGTGGTTTATT 1718
Query 1660 CCGTTTGGATATGTCACTGTCGCAGCTAACGCCTATAGCTTAGCCGAGTTCTTGTGGTGC 1719
||||||||||| |||||||| ||||||| ||| |||||| ||||||||||||||||||||
Sbjct 1719 CCGTTTGGATACGTCACTGTTGCAGCTACCGCATATAGCCTAGCCGAGTTCTTGTGGTGC 1778
Query 1720 GGAGGGACGTTCC-TAGGATGGTGGAACGAGCAAAGGATGTGGCTTTATAGAAGAACAAG 1778
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 GGAGGGACGTTCCGT-GGATGGTGGAACGAGCAAAGGATGTGGCTTTATAGAAGAACAAG 1837
Query 1779 CTCATTTCTTTTCGGATTCATGGACACGATTAAGAAGTTACTCGGGGTTTCGGAGTCTGC 1838
||| |||||||||||||| |||||||||||||||||| |||| || ||||| ||||||||
Sbjct 1838 CTCGTTTCTTTTCGGATTTATGGACACGATTAAGAAGCTACTTGGAGTTTCTGAGTCTGC 1897
Query 1839 GTTTGTGATCACAGCGAAAGTAGCAGAAGAAGAAGCAGCAGAGAGATACAAGGAAGAGGT 1898
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 GTTTGTGATCACAGCAAAAGTAGCAGAAGAAGAAGCAGCAGAGAGATACAAGGAAGAGGT 1957
Query 1899 TATGGAGTTTGGAGTGGAGTCTCCCATGTTTATCCTCCTAGGAACACTCGGTATGCTCAA 1958
|||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct 1958 AATGGAGTTTGGAGTGGAGTCTCCCATGTTTCTCGTCCTCGGAACACTCGGTATGCTCAA 2017
Query 1959 TCTCTTCTGCTTCGCCGCAGCGGTTATGAGACTTGCTTACGGAGACGGTGGAGATTTTAA 2018
||||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||
Sbjct 2018 TCTCTTCTGCTTCGCCGCAGCGGTTGCGAGACTTGTTTCCGGAGACGGTGGAGATTTGAA 2077
Query 2019 GGGAATGGGCTTGCAATTTGTGATAACAGGAGTACTAGTTGTCATAAACTGGCCTTTGTA 2078
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2078 AACAATGGGGATGCAATTTGTGATAACAGGAGTACTAGTTGTCATAAACTGGCCTCTGTA 2137
Query 2079 TGAAGGTATGTTGTTGAGGAAAGACAGAGGAAAGATGCCAATAAGCGTGACAGTTAAATC 2138
| ||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||||
Sbjct 2138 TAAAGGTATGTTGTTGAGGCAAGACAAAGGAAAGATGCCAATGAGCGTTACAGTTAAATC 2197
Query 2139 AGTTGTTATAGCTTTATCTGCCTGCACCTGTTTAGCGTTTTTATAA 2184
||||||| |||||||||||||||| ||||||||||||||||| |||
Sbjct 2198 AGTTGTTTTAGCTTTATCTGCCTGTACCTGTTTAGCGTTTTTGTAA 2243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108332776110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5