BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337680
Length=489
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structura... 189 2e-47
> AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural
maintenance of chromosomes 2 | chr5:25056262-25062625 FORWARD
LENGTH=3763
Length=3763
Score = 189 bits (102), Expect = 2e-47
Identities = 185/222 (83%), Gaps = 18/222 (8%)
Strand=Plus/Plus
Query 22 ATTGCAGTTAGTGGTCGTAACAAGCATTTGATAAATGGGAAGCTTGCACAACCTAGTCAA 81
|||| |||| |||| | |||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 365 ATTGTAGTTGGTGGAAGGAACAAGTATTTGATAAATGGGAAGCTAGCACAACCAAGTCAA 424
Query 82 GTCCAGAATCT-TTTCCACTCTGTGCAGCTTAATAATGTCAACAATCCACACTTTCTCAT 140
|| |||||||| ||| ||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 425 GTTCAGAATCTATTT-CACTCGGTGCAGC-T--TAATGTCAACAATCCACACTTTCTCAT 480
Query 141 CATGCAAGGTAGAATCACCAAAGTCTTAAACATGAAACCTCCCGAGATA----C--TG-T 193
||||||||| | ||||||||||| || || ||||| ||||| |||||| | || |
Sbjct 481 CATGCAAGGGCGTATCACCAAAGTTTTGAATATGAAGCCTCCGGAGATATTGTCCATGCT 540
Query 194 -G--G--G-TGCTGgaacaagaatgtatgaaaacaagaaaga 229
| | | |||||||||||| ||||||||||||||||||||
Sbjct 541 TGAAGAAGCTGCTGGAACAAGGATGTATGAAAACAAGAAAGA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23308644208
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5