BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337696
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00580.1 | Symbols: | COP1-interacting protein-related | ch... 496 2e-139
AT2G01800.1 | Symbols: | COP1-interacting protein-related | ch... 418 5e-116
AT1G30060.1 | Symbols: | COP1-interacting protein-related | ch... 331 7e-90
AT1G56100.1 | Symbols: | Plant invertase/pectin methylesterase... 183 2e-45
> AT4G00580.1 | Symbols: | COP1-interacting protein-related |
chr4:248713-250258 FORWARD LENGTH=954
Length=954
Score = 496 bits (268), Expect = 2e-139
Identities = 465/556 (84%), Gaps = 29/556 (5%)
Strand=Plus/Plus
Query 374 GTGAAGTAGTTGAGAAGAAAACGAGGAAGAGAAAA-CCAAAGAGTTCTGGCAAAAGTAGT 432
|||||| ||||||||| |||||||||||||||||| | ||| ||| | ||| |||||
Sbjct 305 GTGAAGCAGTTGAGAAAAAAACGAGGAAGAGAAAATCGAAA-AGTGCCAACAATAGTAGA 363
Query 433 AAGAAACCCTCCGTAGAGACACCAACAGAAGCTAAAGATGTTGAAAGCGGTGAGGGAAAT 492
||||||| |||| ||||||| ||||| ||||| |||| ||||||| |||||||||| |
Sbjct 364 AAGAAACTCTCCATAGAGACGCCAACGGAAGCAAAAGGCCTTGAAAGTGGTGAGGGAACT 423
Query 493 GTCACTATAATGGGAGAGAATCAG--CA--TG-CA--T--ACCAAGAGG-AGCTAGTAGA 542
||||||| ||| |||||||||| | || | | | ||||||| | || || ||
Sbjct 424 GTCACTAGGTTGGAAGAGAATCAGAATATTTGTGATGTAGATCAAGAGGAACCT-GTCGA 482
Query 543 TGGTCATGCCAAT-GATGTTGAGGCCAATCTTGATCTTAT-GGGGACAATGGAACAAGA- 599
||||||| || || |||||||||||||| |||||||| | |||||||| ||||||||
Sbjct 483 TGGTCATACC-ATAGATGTTGAGGCCAAGATTGATCTT-TCAGGGACAATCGAACAAGAC 540
Query 600 -TC-TTCAAAAGGATGTAGCAAATGCTGATTTAGTCATGATTGACGAAGACAAGGATCTT 657
| |||||||||| |||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 541 GACGTTCAAAAGGAGGTAGCAAATGCTGATTTAAACATGATTGACCAAGACAAGGATCTT 600
Query 658 GAGAAA-GATAATCTTTTAACTGAATTATACCAAACTTCTGATGATGCTGAGAACGAAGG 716
|| ||| ||||||||| || |||||||| |||||||| ||||||||||||||| |||||
Sbjct 601 GA-AAATGATAATCTTCTAGCTGAATTAAACCAAACTAGTGATGATGCTGAGAAAGAAGG 659
Query 717 TCTCATAGATCCTGTTAATGCTACTTGTCAAGCAATTGAAAACTACGAAACTGGGATG-G 775
|||||| || |||||||||||||| | |||| |||| ||| ||||||||| |||| |
Sbjct 660 GATCATAGGTCTTGTTAATGCTACTTCTGAAGCTATTG-AAA--ACGAAACTGAGATGAG 716
Query 776 -GTACAAAGGAAGAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAGAAGaaaaaa 834
|| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 717 TGT-C-AAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAAAAGAAAAAT 774
Query 835 aGAGCAAGGAAAGACAAGAATCTGGCTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAGG 894
||||||| ||||| ||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 775 AGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAGG 834
Query 895 AACGCAGAGGAGGATG 910
||||| ||||| ||||
Sbjct 835 AACGCTGAGGAAGATG 850
> AT2G01800.1 | Symbols: | COP1-interacting protein-related |
chr2:343766-345254 REVERSE LENGTH=915
Length=915
Score = 418 bits (226), Expect = 5e-116
Identities = 329/377 (87%), Gaps = 14/377 (4%)
Strand=Plus/Plus
Query 541 GATGGTCATGCCAATGATGTTGAGGCCAATCTTGATCTTAT-GGGGACAATGGAAC-A-A 597
||||||||| ||| ||||||||||||||| ||||||||| | ||||||||||||| | |
Sbjct 526 GATGGTCATACCATTGATGTTGAGGCCAAGCTTGATCTT-TCAGGGACAATGGAACAAGA 584
Query 598 -GATCTTCAAAAGGATGTAGCAAATGCTGATTTAGTCATGATTGACGAAGACAAGGATCT 656
|| ||||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 585 CGACCTTCAAAAGGAGGTAACAAATGCTGATTTAGTCATGAGTGACCAAGACAAGGATCT 644
Query 657 TGAGAAA-GATAATCTTTTAACTGAATTATACCAAACTTCTGATGATGCTGAGAACGAAG 715
||| ||| ||||||||| || |||||||| |||||||| |||||||||||||||| ||||
Sbjct 645 TGA-AAAGGATAATCTTCTAGCTGAATTACACCAAACTACTGATGATGCTGAGAAAGAAG 703
Query 716 -GTCTCATAGATCCTGTTAATGCTACT-TGTCAAGCAATTGAAAACTACGAAACTGGGAT 773
| |||||| || ||||||||||||| | |||| |||| | | ||||||||| |||
Sbjct 704 AG-ATCATAGGTCTTGTTAATGCTACTCCG-GAAGCTATTG-AGA--ACGAAACTGAGAT 758
Query 774 GGGTACAAAGGAAGAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAGAAGaaaaa 833
| || | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 759 GAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAAAAGAAAAA 818
Query 834 aaGAGCAAGGAAAGACAAGAATCTGGCTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAG 893
|||||||| ||||| ||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 819 AAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAG 878
Query 894 GAACGCAGAGGAGGATG 910
|||||| ||||| ||||
Sbjct 879 GAACGCTGAGGAAGATG 895
Score = 303 bits (164), Expect = 2e-81
Identities = 253/295 (86%), Gaps = 9/295 (3%)
Strand=Plus/Plus
Query 37 GTCTTCGTGAAGACAAGTATTGATACTCGTCTTGG-ACTTCTCCTTGACAGTGATGATAG 95
||||| |||||||| |||||||| ||||||| ||| || |||||||| |||||||||||
Sbjct 28 GTCTTTGTGAAGACTAGTATTGACACTCGTC-TGGCGCTCCTCCTTGATAGTGATGATAG 86
Query 96 TGTATCTGCTTTCAAAGACAAAATCTGCAAGGAACATGAACAGTGTTTCCCAAGTGTTGG 155
||||| |||||||||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 87 TGTATATGCTTTCAAAGAGAAAATCTGCAAAGAGCATGAACAATGTTTCCCAAGTGTTGG 146
Query 156 AAAAATTACAATTTCTTCTGCCTTGAAGGTTAACTTGGGTGGTAACGATTACCACTTGCC 215
|| | | || | | |||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 147 CAACA-T-CACTAT-TTCTGCCTTGAAGGTTAACTTGGGTGGTAATGATTATCACTTGTC 203
Query 216 TGATTCTATGATATTGAAAAAG-GCTCTTCAAGGCATCAGTAACAACAACTGGTTTCTAT 274
|||| || ||| || ||||| |||||||||||| || ||||||| ||||||||||||
Sbjct 204 AGATTGTACGATTTT-AAAAACCGCTCTTCAAGGCCTCCGTAACAAGGACTGGTTTCTAT 262
Query 275 CTGTCGACGTCA-TGCATGTCGAGGAGAAGGGTGAGCTCCAGATTGGTGAAGTTG 328
| |||||| | | | | |||||||||||| |||||||| ||||||||||||||||
Sbjct 263 CAGTCGACCT-AGTACGTGTCGAGGAGAAAGGTGAGCTGCAGATTGGTGAAGTTG 316
> AT1G30060.1 | Symbols: | COP1-interacting protein-related |
chr1:10545087-10545906 REVERSE LENGTH=531
Length=531
Score = 331 bits (179), Expect = 7e-90
Identities = 239/268 (89%), Gaps = 3/268 (1%)
Strand=Plus/Plus
Query 37 GTCTTCGTGAAGACAAGTATTGATACTCGTCTTGGACTTCTCCTTGACAGTGATGATAGT 96
||||| |||||||| ||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 28 GTCTTTGTGAAGACTAGTATTGATACTCGTATGGGGCTTCTCCTTGACAGTGATGATAGT 87
Query 97 GTATCTGCTTTCAAAGACAAAATCTGCAAGGAACATGAACAGTGTTTCCCAAGTGTTGGA 156
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 88 GTATCTGCTTTCAAAGACAAAATCTGCAAAGAACATGAACAGTGTTTCCCAAGTGTTGGC 147
Query 157 AAAATTACAATTTCTTCTGCCTTGAAGGTTAACTTGGGTGGTAACGATTACCACTTGCCT 216
|| || || |||||| |||||||||||||||||||||||||| ||||| |||||| |
Sbjct 148 AACATCACTATTTCT---GCCTTGAAGGTTAACTTGGGTGGTAATGATTATCACTTGTCG 204
Query 217 GATTCTATGATATTGAAAAAGGCTCTTCAAGGCATCAGTAACAACAACTGGTTTCTATCT 276
|||| |||||| ||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct 205 GATTGTATGATTTTGAAAACCGCTCTTCAAGGCCTCAGTAACAAGGACTGGTTTCTATCT 264
Query 277 GTCGACGTCATGCATGTCGAGGAGAAGG 304
||| || || | | ||||||||||||||
Sbjct 265 GTCCACCTCGTACGTGTCGAGGAGAAGG 292
> AT1G56100.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:20980369-20983979 REVERSE
LENGTH=699
Length=699
Score = 183 bits (99), Expect = 2e-45
Identities = 163/193 (84%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 663 AGATAATCTTTTAACTGAATTATACCAAACTTCTGATGATGCTGAGAACGAAGGTCTCAT 722
|||||||||| || |||||||| ||||||| |||||||||||||||| ||||| ||||
Sbjct 351 AGATAATCTTCTAGCTGAATTAAACCAAACAACTGATGATGCTGAGAAAGAAGGGATCAT 410
Query 723 AGATCCTGTTAATGCTACTTGTCAAGCAATTGAAAACTACGAAACTGGGA-TGGGTAC-A 780
|||| |||||||||||||| | |||| |||| ||| |||||||| | | | | | |
Sbjct 411 AGATGTTGTTAATGCTACTTCTGAAGCTATTG-AAA--ACGAAACT-GAAGTCGAT-CTC 465
Query 781 AAGGAAGAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAGAAGaaaaaaaGAGCA 840
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 466 AAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAAAAGAAAAAG-GAGCA 524
Query 841 AGGAAAGACAAGA 853
| ||||| |||||
Sbjct 525 AAGAAAGTCAAGA 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5