BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg337726

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54400.1 | Symbols:  | HSP20-like chaperones superfamily pro...   815    0.0  


> AT1G54400.1 | Symbols:  | HSP20-like chaperones superfamily protein 
| chr1:20307667-20308768 FORWARD LENGTH=552
Length=552

 Score =  815 bits (441),  Expect = 0.0
 Identities = 520/557 (93%), Gaps = 10/557 (2%)
 Strand=Plus/Plus

Query  1    ATGGCAGTAAATATGGAAGGTGGAAACACACACTTTTACGATGAAATCGAACCCTTTTGT  60
            |||||||||||||||||||||  | | |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCAGTAAATATGGAAGGTTCACAGACACACTTTTACGATGAAATCGAACCCTTTTGT  60

Query  61   CGATGGAGAAGAATGGAAGACATCGACATTCTTGAGCTACATCTTCCTTCAGGTTTGAAG  120
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CGATGGAGAAGAACGGAAGACATCGACATTCTTGAGCTACATCTTCCTTCAGGTTTGAAG  120

Query  121  AAAGAGCATCTTAAAATACAGATCAACCACAGTGGTGTACTAACAATAACAGGAGGCTGT  180
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  121  AAAGAGCATCTTAAAATACAGATCAACAACAGTGGTGTACTAACAATAACAGGAGGCTGT  180

Query  181  C-ATGTGGACCAGACCAAATCAATCAGGTTCATGAAAGAAACAAAAGTTGCGAAAA-ATT  238
            | | |||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||
Sbjct  181  CCA-GTGGACCAAACCAAAACAATCAGGTTCATGAAAGAAACAAAAGTTGC-AAAAGATT  238

Query  239  GTAAAAGAAATGAGATTCGCGCGAAGTTCTCAAAGGGAGTTTTGTATGTGACAATGCCAA  298
            ||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||
Sbjct  239  GTAAAAGAAATGAGATTCGTGCAAAGTTCTCTAAGGGAGTTTTGTATGTGACGATGCCAA  298

Query  299  AGACAAGCCCTATAACAGCTGGTCCCTCGGTCGCTTTGAAGGGAGCCACATCACAA-ACT  357
            |||||| ||||||| ||||||||| ||| ||  ||||||||||||||||  ||||| | |
Sbjct  299  AGACAATCCCTATAGCAGCTGGTCTCTCAGTTTCTTTGAAGGGAGCCACGCCACAACA-T  357

Query  358  CGAGACCC-TAAAACAGATGAGGATATGAGAAATGTAGCAAACTGTTCAAGTGAATTTTA  416
            | | |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||
Sbjct  358  CAA-ACCCCTAAAACAGATGAGGGTATGAGAAATGTTGCAAACTGTTCAAGCGAATTTTA  416

Query  417  TA-TCAAGTTTGGCTCATTGAAGCAAAGACTATGGAGGAAGACAGTAGTGGAGGGTGTGG  475
            || | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  417  TAGT-AAGTTTGGCTCATTGAAGCAAAGACTATGGAGGAAGACAGTAGTTGAGGGTGTGG  475

Query  476  CCGCTGTGGTGGTTGTGGCTGCTGCAGTTTTAGGTGTGGTTAAAGCGTACCAATATTTTA  535
            |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct  476  CCGCTGTGGTGGTTGTGGCTGCTGCAGTTTTAGGAGTTGTTAAAGCGTACCAATATTTTA  535

Query  536  TGGCATCACCTGTGTGA  552
            |||||||||||||||||
Sbjct  536  TGGCATCACCTGTGTGA  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5