BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337734
Length=2046
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54440.2 | Symbols: | Polynucleotidyl transferase, ribonucl... 2061 0.0
AT5G35910.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1029 0.0
> AT1G54440.2 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr1:20323036-20328009
FORWARD LENGTH=2246
Length=2246
Score = 2061 bits (1116), Expect = 0.0
Identities = 1344/1455 (92%), Gaps = 12/1455 (1%)
Strand=Plus/Plus
Query 278 TCGA-GAAATTTGATGATTCCATTGATGAGTTCAAGAGGAATCGAAAGATGGAGGAAGAT 336
|||| || |||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 246 TCGATGAGATTTGATGATCCCATGGATGAGTTCAAGAGGAATCGAAAGATGGAGGAAGAT 305
Query 337 TCAAAGAAGGCCATTGATGTGAAAGTAGCTGAGAGTGATAAGAGATTTGAGAAACATGGC 396
|| ||||||| || ||||||||||| ||||||||||||||| |||| | |||| ||||
Sbjct 306 TCGAAGAAGGTAATCGATGTGAAAGTGGCTGAGAGTGATAAGGGATTCGCGAAATTTGGC 365
Query 397 AAGGCAAAGGCTCCGTTTCATTTGCCAACGATAACGAAGCCTCAAGAGGAGTATAAGATT 456
|||||| ||| |||||||||| | || ||| |||||||||||||||||||||||||||||
Sbjct 366 AAGGCAGAGGTTCCGTTTCATATACCGACGTTAACGAAGCCTCAAGAGGAGTATAAGATT 425
Query 457 TTGGTGGAAAATGCAAATAAACCCTTTGACCATGTTTTGTTGGAGAAGAGTGAGGACGGT 516
||||| || ||||| ||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 426 TTGGTAGACAATGCTAATAATCCTTTTGAGCATGTTTTGTTGGAGAAGAGTGAAGACGGT 485
Query 517 CTTCGCTTTATTCATCCATTGGAGAAACTTTCGGTGATGGACTTTGTCGATA-ACAATCT 575
||||| || ||||||||| ||||| |||| || |||||||||||||| |||| | |||||
Sbjct 486 CTTCGGTTCATTCATCCACTGGAGGAACTATCTGTGATGGACTTTGTTGATAGA-AATCT 544
Query 576 AACTGAGATTATTCCTGTTAAGCCTCTCCCATTGGAAGAGACTCCATTCAAGCTTGTTGA 635
|| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 545 AAGTGAGATGAGACCTGTTAAGCCTCTCCCATTGGAAGAGACTCCATTCAAGCTAGTTGA 604
Query 636 AGAAGTCAAAGATCTCGAGGACTTAGCTGC-GACATTGCAAAGTGTTGAAGAGTTTGCTG 694
||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 605 AGAAGTCAAAGATCTTGAGGACTTAGCTGCTG-CATTGCAAAGTGTTGAAGAGTTTGCTG 663
Query 695 TTGATCTGGAGCATAATCAGTATAGATCTTTTCAAGGATTAACATGCTTGATGCAAATCT 754
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 664 TCGATCTGGAGCATAATCAGTATAGAACTTTTCAAGGATTAACATGCTTGATGCAAATCT 723
Query 755 CCACCAGAACCGAGGATTATATTGTTGATACATTCAAGCTTTGGGATCACATTGGTCCTC 814
| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 724 CTACTAGAACCGAGGATTATATTGTTGATATATTCAAGCTTTGGGATCACATTGGTCCTT 783
Query 815 ATCTAAGGGAACTCTTCAAAGACCCTAAAAAGAAAAAGGTAATGCATGGAGCAGATC-AT 873
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 784 ATCTAAGGGAACTCTTCAAAGACCCTAAAAAGAAAAAGGTAATCCATGGAGCAGATCGA- 842
Query 874 GATATTATTTGGCTTCAACGGGACTTCGGCATTTATGTCTGCAATCTTTTTGACACAGGA 933
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 843 GATATTATTTGGCTTCAACGGGACTTTGGCATTTATGTCTGCAATCTTTTTGACACAGGA 902
Query 934 CAGGCCTCAAGGGTGCTAAAGCTGGAGAGAAAGAGTCTGGAATTTCTTTTGAAGCATTAT 993
||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 903 CAGGCTTCAAGGGTGCTAAAGCTGGAGAGAAATAGTCTGGAATTTCTTCTGAAGCATTAT 962
Query 994 TGTGGAGTTGCTGCAGACAAACAATACCAAAATGCAGACTGGAGAATACGACCCCTTCCA 1053
||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||||
Sbjct 963 TGTGGAGTTGCTGCAAACAAAGAATACCAAAAAGCAGACTGGAGAATAAGACCCCTTCCA 1022
Query 1054 GATGTAATGACAAGATATGCTAGAGAAGATACACATTATCTTTTGTACATTTATGATGTA 1113
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GATGTAATGAAAAGATATGCTAGAGAAGATACACATTATCTTTTGTACATTTATGATGTA 1082
Query 1114 ATGCGAATAGATTTGCACACAATGGCAAAGGAAGATGAGCAATCTGACTCTCCTCTGGTA 1173
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 ATGCGAATGGAGTTGCACACAATGGCAAAGGAAGATGAGCAATCTGACTCTCCTCTGGTA 1142
Query 1174 GAGGCATACAAGGGCAGTTATGACGTGTGCATGCAACTATATGAGAAAGAGCTTTTGACT 1233
|||| |||||| ||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1143 GAGGTGTACAAGCGCAGTTATGACGTGTGCATGCAACTATATGAAAAAGAGCTTTGGACT 1202
Query 1234 GGGGATTCATATCTTCACACTTATGGGGTT-AGGTCAGGTAATCTCAATGCGGTTCAACT 1292
||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct 1203 AGGGATTCATATCTTCACGTTTATGGGGTTCA-GACAGGTAATCTCAATGCGGTTCAACT 1261
Query 1293 TTCCATTGTTGCGGGTCTTTGTGAATGGCGGGATCGGATTGCACGTGCAGACGATGAGAG 1352
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1262 TTCCATTGTTGCGGGGCTTTGTGAATGGCGGGATCGGATTGCACGCGCAGATGATGAGAG 1321
Query 1353 CACCGGTTATGTATTACCAAATAAAACTCTTTTTGACATAGCCAAGGACATGCCAATTAC 1412
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1322 CACCGGTTATGTATTGCCAAATAAAACTCTTTTTGACATAGCCAAGGAGATGCCAATTGT 1381
Query 1413 TACTGCTCAGTTGCGCCGGTTGTTGAAGTCAAAGCATCCTTACATCGAGCGTAATTTTGA 1472
| ||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1382 TGTTGCCCAGTTGCGCCGTTTGTTGAAGTCAAAGCTTCCTTACCTCGAGCGTAATTTTGA 1441
Query 1473 CGCAGTGATCAGTGTCATCAGACGATCAATGCAAAATGCAGCGGCATTCGAGCCAGTTGT 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 CGCAGTGATCAGTGTCATCAGACGATCAATGCAAAATGCAGCGGCATTCGAGCCAGTTGT 1501
Query 1533 TCAATCTTTAAAAGATTGGCGTCCTGAAACAGTGGTTGAAAAGAATATCGAACCTAAGAT 1592
||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1502 TCAATCTTTGAAAGATAGGCGTCCTGAAACAGTGGTTGAAATGAATATAGAACCTAAGAT 1561
Query 1593 TGAGAAAACAGGCACAGAAGCTTCATCCTCTTCTCTGAGTTTGAAGAAGTTTTCTGTGGA 1652
||||||||||| ||||| ||||||| | |||||||||||| || ||||| ||| ||||||
Sbjct 1562 TGAGAAAACAGACACAGGAGCTTCAGCGTCTTCTCTGAGTCTGGAGAAGGTTTGTGTGGA 1621
Query 1653 TGATTCaaaaaaaCAAAGCAGCAGTGGTTTTGGAAATTTGCCGTCAAAGAGAAAGTTTGA 1712
||||||||| ||||||||||| |||||||||| |||||||| |||||| ||||| ||
Sbjct 1622 TGATTCAAAGAAACAAAGCAG---TGGTTTTGGAGTTTTGCCGTTAAAGAGGAAGTTGGA 1678
Query 1713 AAGCGACAAAAAGGT 1727
||| ||||||| |||
Sbjct 1679 AAGTGACAAAACGGT 1693
Score = 575 bits (311), Expect = 6e-163
Identities = 441/499 (88%), Gaps = 28/499 (6%)
Strand=Plus/Plus
Query 1559 AAACAGTGGTTGAAAAGAATATCGAACCTAAGATTGAGAAAACAGGCACAGAAGCTTCAT 1618
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1687 AAACGGTGGTTGAAAAGAATATCGAACCTAAGATTGAGAAAACAGGCACAGAAGCTTCAG 1746
Query 1619 CCTCTTCTCTGAGTTTGAAGAAGTTTTCTGTGGATGATTCaaaaaaaCAAAGCAGCAGTG 1678
| ||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||| ||
Sbjct 1747 CTTCTTCTCTGAGTTCGAAGAAGGTTTGTGTGGATGATTCAAAGAAACAAAGCAG---TG 1803
Query 1679 GTTTTGGAAATTTGCCGTCAAAGAGAAAGTTTGAAAGCGACAA-AA-----AGGTAAAAG 1732
|||||||| ||||| ||||||||| ||||||||||| || || || |||||||||
Sbjct 1804 GTTTTGGAGTTTTGCTGTCAAAGAGGAAGTTTGAAAGTGATAACAAGTTGCAGGTAAAAG 1863
Query 1733 AAGAGGTCAAAGTGTCCAAGTCCAAGCCAAATGAGGTAATCATAGTGGTGgatgatgatg 1792
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1864 AAGAGGTCAAAGTGTCCAAGTCCAAGCCAGATAAGGTAATCATAGTGGTGGATGATGATG 1923
Query 1793 acgatgacgatgatga-G--TCTTATGAACAGAGCTCGGAAA-CCGCTGATGCTTTGAAC 1848
| ||||| |||||||| | ||||||||||||||| || ||| |||||||||||||| ||
Sbjct 1924 ATGATGATGATGATGATGAGTCTTATGAACAGAGCACG-AAAGCCGCTGATGCTTTGGAC 1982
Query 1849 AGAGTTTCGGAAACGCCTTCTAAGGGATCACTATCGATGACTCAAAAGCCGAAGATATGT 1908
|||||||||||||||||||| |||||||||| |||| |||||||||||||||||| ||||
Sbjct 1983 AGAGTTTCGGAAACGCCTTCGAAGGGATCACCATCGTTGACTCAAAAGCCGAAGACATGT 2042
Query 1909 AATA-AGGAGATAATAGTGTTAGACGATGATGATGAGTCAGAGAATGACTCGGAAAGCAG 1967
|||| || || | || |||||||||||||||||||| | | | |||||||||
Sbjct 2043 AATACAG-AGGTTATTGTGTTAGACGATGATGATGA--C------T--C--GGAAAGCAG 2089
Query 1968 AGAAGAGGAAGAGATGCGTAGGAGAAGTGAGAAGCATAGGAGATTCATGAATATGAAACG 2027
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2090 AGAAGATGAAGACATGCGTAGGAGAAGTGAGAAACATAGGAGATTCATGAATATGAAACG 2149
Query 2028 CGGCTTTCTTAACATTTAG 2046
||||||||||||||||||
Sbjct 2150 TGGCTTTCTTAACATTTAG 2168
Score = 267 bits (144), Expect = 4e-70
Identities = 158/165 (96%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 61 CCGACGAATCTCTCAAAACTATCTTCGTCTTCTCGTACAATTCCGACGAACAGAGATTTC 120
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 93 CCGAAGAATCTCTCAAAACTATCTTCGTCTTCTCTTACAATTCCGACGAACAGAGATTTC 152
Query 121 CATTCTCTCTACAAGTCCGACGAGTTCAAGCGTCCGATCGATGAGATAGCTCGGATCTCG 180
|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 153 CATTCTCTCTCCAAGTCCGACGAGTTCAAGCGTCCGATCGATGAGTTAGCTTGGAGCTCG 212
Query 181 CAGTCTGTTCTTGAGACGATTGGTGGTAAGAAATCGATGACATTT 225
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 213 CAGTCTGTTCTTGAGACGATTGGTGGTAAGAAATCGATGAGATTT 257
> AT5G35910.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr5:14029686-14035493
REVERSE LENGTH=2886
Length=2886
Score = 1029 bits (557), Expect = 0.0
Identities = 1045/1275 (82%), Gaps = 56/1275 (4%)
Strand=Plus/Plus
Query 349 ATTGATGTGAAAG-TAGCTGAGAGTGATAAGAGATTTGAGAAACATGGCAAGGC-AAAGG 406
|||||||| ||| | |||||||| ||||||| | || | | ||| ||||| ||| |
Sbjct 599 ATTGATGT-TAAGATGGCTGAGAGGGATAAGA-A-TT---CATC-TGGTAAGGCTAAA-G 650
Query 407 CTCCGTTTCATTTGCCAACGATAACGAAGCCTCAAGAGGAGTATAAGATTTTGGTGGAA- 465
||| |||||| | ||||| |||| ||||||||||||||||||||| || ||||| |||
Sbjct 651 TTCCTTTTCATGTACCAACTATAAAGAAGCCTCAAGAGGAGTATAACATATTGGT-GAAC 709
Query 466 AATGCAAATAAACCCTTTGACCATGTTTTGTTGGAGAAGAGTGAGGACGGTCTTCGCTTT 525
||||| ||| ||| ||||| ||||||| |||||||| ||| ||||| | ||| || |
Sbjct 710 AATGCGAATCTACCGTTTGAGCATGTTTGGTTGGAGAGGAGCGAGGATGATCTGCGGGCT 769
Query 526 ATTCATCCATTGGAGAAACTTTCGGTGATGGACTTTGTCGATAACA-ATCT-AACTGAGA 583
|| ||||| ||||||||| |||| ||| | ||||| || || || | || | ||| ||||
Sbjct 770 ATGCATCCTTTGGAGAAATTTTCAGTGCTTGACTTCGTTGACAA-AGATGTAAAC-GAGA 827
Query 584 T-TATTCCTGTTAAGCCTCTCCCATTGGAAGAGACTCCATTCAAGCTT-GTTGAAGAAGT 641
| | ||||| ||||| || ||| ||||| |||||||||||||| || || | |||||
Sbjct 828 TGGA-ACCTGTGAAGCCCCTTCCACTGGAACAGACTCCATTCAAG-TTCGTCCAGGAAGT 885
Query 642 CAAAGATCTCG-AGGACTTAGCTGCGACATTGCAAAGTGTTGAAGAGTTTGCTGTTGATC 700
|||||||| | | || |||| ||| | | ||| ||||||||||||||||| |||||||
Sbjct 886 GAAAGATCT-GAAAGAATTAGTTGCCAAACTGCGTAGTGTTGAAGAGTTTGCGGTTGATC 944
Query 701 TGGAGCATAATCAGTATAGATCTTTTCAAGGATTAACATGCTTGATGCAAATCTCCACCA 760
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 945 TGGAGCATAATCAGTATAGATCTTTTCAAGGATTGACATGCTTGATGCAAATTTCCACCA 1004
Query 761 GAACCGAGGATTATATTGTTGATACATTCAAGCTTTGGGA-TCACATTGGTCCTCATCTA 819
|||| ||||||||||| ||||||||||| |||| || | | ||||||||| ||| |||||
Sbjct 1005 GAACAGAGGATTATATAGTTGATACATTTAAGC-TTCGTATTCACATTGGGCCTTATCTA 1063
Query 820 AGGGA-ACTCTTCAAAGACCCTAAAAAGAAAAAGGTAATGCATGGAGCAGATC-ATGATA 877
||||| | | ||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1064 AGGGAGA-TATTCAAAGACCCTAAAAAGAAAAAGGTAATGCATGGAGCAGATCGA-GATA 1121
Query 878 TTATTTGGCTTCAACGGGACTTCGGCATTTATGTCTGCAATCTTTTTGACACAGGACAGG 937
|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1122 TTATCTGGCTTCAACGGGACTTCGGCATATATGTCTGCAATCTCTTTGACACAGGACAGG 1181
Query 938 CCTCAAGGGTGCTAAAGCTGGAGAGAAAGAGTCTGGAATTTCTTTTGAAGCATTATTGTG 997
|||| ||||| ||||| |||||||||| || ||||| ||||||||| |||||| |||||
Sbjct 1182 CCTCCAGGGTTCTAAATTTGGAGAGAAATAGCCTGGAGTTTCTTTTGCAGCATTTTTGTG 1241
Query 998 GAGTTG-CTGCAGACAAACAATACCAAAATGCAGACTGGAGAATACGACCCCTTCCAGAT 1056
|||| | ||||| | ||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 1242 GAGT-GACTGCAAATAAAGAGTACCAAAATGCAGACTGGAGAATAAGACCCCTTCCAGAG 1300
Query 1057 GTAATGACAAGATATGCTAGAGAAGATACACATTATCTTTTGTACATTTATGATGTAATG 1116
| ||||||||||||||| ||||||||||| || || || || ||||| |||||| ||||
Sbjct 1301 GAAATGACAAGATATGCAAGAGAAGATACCCACTACCTCTTATACATATATGATTTAAT- 1359
Query 1117 CGAA-TAGATTTGCACACAATGGCAAAGGAAGATGAGCA-ATCTGACTCTCCTCTGGTAG 1174
| || |||| |||| | |||||||||||| || | ||| | ||||||||||||| | |
Sbjct 1360 CAAACTAGAACTGCAGAGAATGGCAAAGGATGACGCGCATA-CTGACTCTCCTCTACTTG 1418
Query 1175 AGG-CATACAAG-GGCAGTTATGACGTGTGCATGCAACTATATGAGAAAGAGCTT-TTGA 1231
||| | |||||| || ||||| || ||||||| |||||||||||||||||| || ||||
Sbjct 1419 AGGTC-TACAAGCGG-AGTTACGATGTGTGCACACAACTATATGAGAAAGAG-TTATTGA 1475
Query 1232 CTGGGGATTCATATCTTCACACT-TATGGGGTT-AGGTCAG-GTAATCTCAATGCGGTTC 1288
| | | |||||||||||||| | |||||| || | | ||| | | | ||||| | ||
Sbjct 1476 CCGAGAATTCATATCTTCACG-TATATGGGCTTCAAG-CAGCGGGCTTT-AATGCAGCTC 1532
Query 1289 AACTTTCCATTGTTGCGGGTCTTTGTGAATGGCGGGATCGGATTGCACGTGCAGACGATG 1348
||||| ||||||||||||| |||||||||||| ||||| ||||||||||| || ||||
Sbjct 1533 AACTTGCCATTGTTGCGGGGCTTTGTGAATGGAGGGATTTCATTGCACGTGCGGAGGATG 1592
Query 1349 AGAGCACCGGTTATGTATTACCAAATAAAACTCTTTTTGACATAGCCAAGGACATGCCA- 1407
||||||| ||||||||||| ||||| ||| ||| |||| ||||||||||| |||||
Sbjct 1593 AGAGCACTGGTTATGTATTGCCAAACAAAGTTCTCCTTGAAATAGCCAAGGAGATGCCTG 1652
Query 1408 ATTACTACTGCTCAGTTGCGCCGGTTGTTGAAGTCAAAGCATCCTTACATCGAGCGTAAT 1467
|| | | || | ||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct 1653 AT-AGTGTTGGAAAATTGCGTCGGATGTTGAAGTCAAAGCATCCTTATATCGAGCGTAAT 1711
Query 1468 TTTGACGCAGTGATCAGTGTCATCAGACGATCAATGCAAAATGCA-GCGGCATTCGAGCC 1526
|||| | ||| ||||||||||||| | |||||||||| || | || ||||| ||| |
Sbjct 1712 GTTGATTCGGTGGTCAGTGTCATCAGGCAATCAATGCAACATT-ATGCAGCATTTGAGTC 1770
Query 1527 AGTTGTTCAATCTTTAAAAGAT-TGGCGTCCTG-AAACAGTGGTTGAAAAGAATATCGAA 1584
| || || ||||||||||||| || | ||||| ||| || | || |||||||| |||
Sbjct 1771 TGCTGCTCTATCTTTAAAAGATGTGTC-TCCTGGAAAT-GTAATGGATAAGAATATTGAA 1828
Query 1585 CCTA-AGATTGAGAA 1598
|||| | | ||||||
Sbjct 1829 CCTATA-AGTGAGAA 1842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101405100900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5