BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337736
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54460.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 1155 0.0
> AT1G54460.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr1:20340600-20343530 REVERSE LENGTH=1465
Length=1465
Score = 1155 bits (625), Expect = 0.0
Identities = 756/818 (92%), Gaps = 14/818 (2%)
Strand=Plus/Plus
Query 237 ATCTTCAGTTAAAACTCGTGTTACTGCGAAAACAACTGTTCCAAAGCCGTTTTCTCTGTC 296
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 348 ATCTTCTGTTAAACCTCGTGTTACTGCGAAAACAACTGTTCCAAAGCCGTTTTCCCTGTC 407
Query 297 GGCTGAAAAGCCTAGAAGAGCAGTAGTTGATAATAATTCATTAGGAAATGGTGCTAGCCA 356
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 408 GGCTGAAAAGCCTAGAAGAGCAGCGGTTGATAATAATTCATTAGGAAATGGTGCTAGCCA 467
Query 357 TAACTCTTCTTCAGCATCAAGAGTTTCACAGCTAAATTCTCCTCTACCAGCTAGGAGGAC 416
|||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 468 TAACTCTTCTTCAGCATCAAGAGTTTCACAGCTAAACTCTCCTTTACCAACTAGGAGGAT 527
Query 417 ACCAGATCACAAGAAACATCATGATGAAGAAGATAGTTTTTCCGTTGCTTCCTCATCGGC 476
||||||||| |||| || ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 528 ACCAGATCATAAGATGCACCATGATGAAGAAGATAGTTTTTCTGTTGCTTCCTCATCAGC 587
Query 477 TACATCCATAAGAAGTTTTAAACCCAAGATAACGGTTGGAGTTGCTCCAACATTTAGTAG 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 588 TACATCCATAAGAAGTTTTAAACCCAAGATAACGATTGGAGTTGCTCCAACATTTAGTAG 647
Query 537 CACAGCGCGGCTGGAGAGGCGGAGAGAGTTTTACCAGAAGTTAGAGGAGAAACAGAAAGC 596
|||| |||| |||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 648 CACATCGCGACTGGAGAGACGAAGAGAGTTTTACCAGAAGTTAGAGGAAAAACAGAAAGC 707
Query 597 ACTTGAGGCAGAGAAAATAGAGAACGAGAAAAGGCTCAAGGAAGAGCAAGAAGCAGTCAC 656
|||||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 708 ACTTGAAGCAGAGAAAAGAGAAAACGAGAAAAGGCTTAAGGAAGAGCAAGAAGCAGTCAC 767
Query 657 TAAACAACTCAGGAGGAACATGGCTTACAAAGCTAATCCGGTACCAAGTTTCTACCAAGA 716
||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TAAGCAACTTAGGAAGAACATGGCTTACAAAGCTAATCCGGTACCAAGTTTCTACCAAGA 827
Query 717 GGGTCCTCCACCGAAACAACCGTTGAAAAAGTTTCCACTGACTCGGCCTAAGTCACCAAA 776
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 828 GGGTCCTCCACCGAAACAACCATTGAAAAAGTTTCCATTGACTCGGCCTAAGTCACCAAA 887
Query 777 CCTCAACCGTAGAAAGAGCTGCAGTGACACAGTTAACGCATCATATCAGGAGGTGAAGGG 836
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 888 CCTTAACCGTAGAAAGAGCTGCAGCGACACAGTTAACGCATCATATCAGGAAGTGAAGGG 947
Query 837 GAAGCATTGTGCTCGACATCGTCACAGTGTAGGTGGTTGCAAGGAAGAACCCAAAACGAA 896
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 948 GAAGCATTGTGCTCGACATCGTCACAGTGTAGGTGGTTGCAAGGATGAAGTCAAAACGAA 1007
Query 897 CAGTGTCCCAAGGACACCAAATAGCAGCAGCAAAGATCATATGAAAAAGTCCACAAAGGA 956
||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 1008 CAGTGTCCCAAGGACACCAAATAGCAGCAGCAAAGATCAGATGAGAAAGTCCAAAAAGGG 1067
Query 957 AACACCAAAATCTGAAGAAGTGCATGGAAA-GCTTGTGGGAAAAAACAAGAGTGGTCATG 1015
||||||||| ||||||||||| |||| ||| | || | || | | ||| ||||
Sbjct 1068 AACACCAAAGTCTGAAGAAGTACATG-AAATG-TT-T---AATA-----G--TGGCCATG 1114
Query 1016 ATGGAGAGACAGATGAGAATGGTGTTGTTGTTGTGGAG 1053
|||||||||| | ||||||||| |||| ||||||||||
Sbjct 1115 ATGGAGAGACTGGTGAGAATGGCGTTGGTGTTGTGGAG 1152
Score = 276 bits (149), Expect = 4e-73
Identities = 197/220 (90%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAGAGAACTTGTAGACAAACACATGAATAAGAAGGCAAATAGTTTGACAGCTAGC 60
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 142 ATGGGGAGAGAACTTGTAGACAAACACATGGATAAGAAAGCGAATAGTTTGACAGCTAGC 201
Query 61 TCAACCGGATCTTCGGATGATAATAAAGTCCGAAGTCCTTCGACTA-TAGAAGCTGCGGA 119
|| || |||||||| |||||||||||||||| |||||| || |||| | |||||||| ||
Sbjct 202 TCGACGGGATCTTCAGATGATAATAAAGTCCCAAGTCCGTCTACTAAT-GAAGCTGCAGA 260
Query 120 GGTGAAAGAATGCACTGAGCAGAACTTGGTTGCGGATGATGCTCGTATGAGGCCACTAGA 179
||||||||||||||| |||||||| ||||||||||||||||||||| |||||| || ||
Sbjct 261 GGTGAAAGAATGCACCGAGCAGAATTTGGTTGCGGATGATGCTCGTTTGAGGCAACAAGG 320
Query 180 GATAATTGATACACCTGGATCCCATAAAAT-TTCTGATAA 218
||||| ||| |||||||||||||||||| | ||||| |||
Sbjct 321 GATAACTGAGACACCTGGATCCCATAAA-TCTTCTGTTAA 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5