BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337751
Length=411
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54580.1 | Symbols: ACP2 | acyl carrier protein 2 | chr1:203... 604 1e-172
AT1G54630.1 | Symbols: ACP3 | acyl carrier protein 3 | chr1:204... 599 7e-171
> AT1G54580.1 | Symbols: ACP2 | acyl carrier protein 2 | chr1:20389347-20391015
FORWARD LENGTH=881
Length=881
Score = 604 bits (327), Expect = 1e-172
Identities = 385/413 (93%), Gaps = 4/413 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCCATTGCTGCTTCTTCTTCTACTTCTCTGCTAGCTCGTCCTCGCCAACTGGTG 60
||||||||||||||||||||| |||||| ||| || | |||||||||||||||||||| |
Sbjct 226 ATGGCTTCCATTGCTGCTTCTGCTTCTATTTCCCTTCAAGCTCGTCCTCGCCAACTGGCG 285
Query 61 ATTGCGGCTAATCAAGTTAGATGCTTTAGCTATGGAAGAAGAAGCTA-TCTTTCTTTTAA 119
|| ||||||| |||||||| | |||||||| |||||||||||||| | ||||||||||||
Sbjct 286 ATCGCGGCTAGTCAAGTTAAAAGCTTTAGCAATGGAAGAAGAAGC-AGTCTTTCTTTTAA 344
Query 120 TCTTCGCCAGCTTCCTACCCGCTTGAGTGTTTCCTGCGCTGCAAAACCTGAGACAGTGGA 179
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 345 TCTCCGCCAGCTTCCTACCCGCTTGACTGTTTCCTGCGCTGCAAAACCTGAGACAGTGGA 404
Query 180 CAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGAAGACGAAGTTACCGC 239
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 405 CAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGCTGACGAAATTACTGC 464
Query 240 TGCTACCAAATTT-CTTGCACTTGGTGCTGATTCTCTTGACACGGTGGAGATTGTGATGG 298
||| ||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 465 TGCCACCAAATTTGCT-GCACTTGGTGCTGATTCCCTTGATACGGTGGAGATTGTGATGG 523
Query 299 GACTAGAGGAAGAGTTTGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCGACAG 358
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 524 GACTAGAGGAAGAGTTCGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCCACAG 583
Query 359 TTGAGCAAGCAGCTGAGCTCATTGAGGAGCTCTTGTTGGAAAAGGCCAAGTAG 411
||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 584 TTGAGCAAGCAGCTGCGCTCATTGAGGAGCTCTTGTTTGAAAAGGCCAAGTAG 636
> AT1G54630.1 | Symbols: ACP3 | acyl carrier protein 3 | chr1:20401398-20403041
REVERSE LENGTH=777
Length=777
Score = 599 bits (324), Expect = 7e-171
Identities = 384/413 (93%), Gaps = 4/413 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCCATTGCTGCTTCTTCTTCTACTTCTCTGCTAGCTCGTCCTCGCCAACTGGTG 60
||||||||||||||| ||||| ||||||||||||| | |||||||||||| |||||||||
Sbjct 123 ATGGCTTCCATTGCTACTTCTGCTTCTACTTCTCTCCAAGCTCGTCCTCGTCAACTGGTG 182
Query 61 ATTGCGGCTAATCAAGTTAGATGCTTTAGCTATGGAAGAAGAAGCTATCTTTCTTTTAAT 120
|||| |||||| ||||||| | |||||||||||||||| |||||| ||||||||||||||
Sbjct 183 ATTGGGGCTAAACAAGTTAAAAGCTTTAGCTATGGAAGCAGAAGCAATCTTTCTTTTAAT 242
Query 121 CTTCGCCAGCTTCCTACCCGCTTGAGTGTTTCCTGCGCTGCAAAACCTGAGACAGTGGAC 180
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 243 CTTCGCCAGCTTCCTACCCGCTTGACTGTTTACTGCGCTGCAAAACCTGAGACAGTGGAC 302
Query 181 AAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGAAGACGAAGTTACCGCT 240
||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct 303 AAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTCAAAGAGGCTGACGAAATTACCGCT 362
Query 241 GCTACCAAATTT-CTTGCACTTGGTGCTGATTCTCTTGACACGGTGGAGATTGTGATGGG 299
|| ||||||||| || ||||||||||||||||| ||||| ||||||||||| || |||||
Sbjct 363 GCCACCAAATTTGCT-GCACTTGGTGCTGATTCCCTTGATACGGTGGAGATAGTTATGGG 421
Query 300 ACTAGAGGAAGAGTTTGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCGACAGT 359
| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 422 ATTAGAGGAAGAGTTTGGGATTGAAATGGCGGAGGAGAAAGCACAGTCTATCGCCACAGT 481
Query 360 TGAGCAAGCAGCTG-AGCTCATTGAGGAGCTCTTGTTGGAAAAGGCCAAGTAG 411
|||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 482 TGAGCAAGCAGCTGCA-CTCATTGAGGAGCTCTTGTTGGAAAAGGCCAAGTAG 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19453618863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5