BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337776
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54940.1 | Symbols: PGSIP4 | plant glycogenin-like starch in... 2534 0.0
> AT1G54940.1 | Symbols: PGSIP4 | plant glycogenin-like starch
initiation protein 4 | chr1:20481690-20484541 FORWARD LENGTH=1674
Length=1674
Score = 2534 bits (1372), Expect = 0.0
Identities = 1584/1686 (94%), Gaps = 15/1686 (1%)
Strand=Plus/Plus
Query 1 ATGGGGACAAAAACCCATAATTCTAGAGGGAAAATCTTCATGATCTATCTAATACTAACC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1 ATGGGGACAAAAACCCATAATTCTAGAGGGAAAATCTTCATGATCTATCTAATCCTAGTC 60
Query 61 TCATTGTCACTTCTAGTTCTAGGTTTGATCTTATCTTTTAAACCTCTTTTACGGATT-CG 119
||||||||| | ||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 61 TCATTGTCA---C---TTCTAGGTTTGATCTTACCTTTTAAACCTCTTTTCCGGATTAC- 113
Query 120 ATCTCCATCTTCAACGTTACGGATTGATGATCTTCCGCCGCCGCAAGTCAACAAAAACCC 179
|||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 114 TTCTCCATCTTCAACGTTACGGA-T--TGATCTTCCATCGCCGCAAGTCAACAAAAACCC 170
Query 180 CAAATGG-TTCCGACTCATCCGTAACTATCTACCGGA-AAAGAGAATTCAAGTCGGCTTC 237
|||||| || ||||||||||||||||||||||| || ||| ||||| ||||||||||||
Sbjct 171 GAAATGGCTT-CGACTCATCCGTAACTATCTACCAGAGAAA-AGAATCCAAGTCGGCTTC 228
Query 238 CTCAACATTGACCAGATAGAACGTGAGAGGTACGAGGCTCGTGGACCGTTGATAGTAAAG 297
|| ||||| ||| ||| ||| |||||||| ||||||||||||||||||||| || | |||
Sbjct 229 CTTAACATAGACGAGAAAGAGCGTGAGAGCTACGAGGCTCGTGGACCGTTGGTACTTAAG 288
Query 298 AACATCCACGTGCCGCTTGATCCTATACCGAAGAATGTTACTTGGAAGAGTCTTTACCCG 357
|||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 289 AACATCCACGTGCCGCTTGATCATATACCCAAGAATGTCACTTGGAAGAGTCTTTACCCG 348
Query 358 GAGTGGATCAACGAGGAAGTTTCTAACTGTCCGGAGATCCCTCTCCCTCAGCCAGAAGGT 417
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 349 GAGTGGATCAACGAGGAAGCTTCTACCTGTCCGGAGATCCCTCTCCCTCAGCCAGAAGGT 408
Query 418 TCTGATGCTAACGTGGACGTTATCGTTGCTAGAGTTCCATGTGATGGTTGGTCGGAGAAT 477
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 409 TCTGATGCTAACGTGGACGTTATTGTTGCTAGAGTTCCATGTGATGGTTGGTCGGCGAAT 468
Query 478 AAAGGGCTTAGGGATGTTTTTAGGCTTCAGGTTAACTTGGCCGTTGCGAATCTAGCCGTC 537
|||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 469 AAAGGGCTTAGGGACGTTTTTAGGCTTCAGGTTAATTTGGCCGCAGCGAATCTAGCCGTC 528
Query 538 CAAAGTGGGTTGAGGAGGGTTGATCAGGCGGTGTACGTTGTGTTCATCGGGTCATGTGGC 597
|||||||||||||||| |||| |||||||||| |||||||| |||||||| ||||||||
Sbjct 529 CAAAGTGGGTTGAGGACGGTTAATCAGGCGGTCTACGTTGTATTCATCGGCTCATGTGGG 588
Query 598 CCTATGCATGAGATTTTCCCGTGCGATGAGCGCGTGAGGCGCGTGGATGATTATTGGGTG 657
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 589 CCTATGCATGAGATTTTCCCGTGCGATGAGCGCGTGATGCGCGTGGAGGATTATTGGGTG 648
Query 658 TATAAGCCTTATCTCCCAAGGTTGAAGCAGAAGCTTCTCATGCCTGTTGGTTCATGTCAC 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TATAAGCCTTATCTCCCAAGGTTGAAGCAGAAGCTTCTCATGCCTGTTGGTTCATGTCAG 708
Query 718 ATTGCACCTCCATTTGCTCAATTTGGCCAAGAGGCATGGAGACCAAAACATAAAGACAAT 777
||||| ||| |||||||||||||||| ||||| |||||||||||||||||| |||| |||
Sbjct 709 ATTGCTCCTTCATTTGCTCAATTTGGTCAAGAAGCATGGAGACCAAAACATGAAGATAAT 768
Query 778 CTTGTATCCGAGGCGGTCACAGCCTTACCCCGACGCTTACGGGTTGCCTACGTAACAGTA 837
|||| ||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 769 CTTGCATCAAAGGCAGTCACAGCCTTACCCCGTCGCTTACGGGTTGCCTACGTGACAGTA 828
Query 838 CTACATTCTTCAGAAGCCTATGTTTGTGGGGCAATAGCCTTAGCGCAAAGTATAAGACAA 897
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 829 CTACACTCGTCAGAAGCCTATGTTTGTGGGGCAATAGCTTTAGCGCAAAGTATAAGACAA 888
Query 898 ACAGGATCTCATAAGGACATGATTCTCCTCCATGATCATACCATAACCAACAAGTCTCTT 957
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCAGGATCGCATAAGGACATGATTCTCCTCCATGATCATACCATAACCAACAAGTCTCTT 948
Query 958 ATTGGTCTCAGCTCTGCGGGATGGAATCTCCGGCTAATCGAAAGAATCCGCAGTCCTTTT 1017
|||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 949 ATTGGTCTCAGCGCTGCGGGATGGAATCTCCGGCTAATCGACAGGATCCGCAGTCCTTTT 1008
Query 1018 TCGCAAAAAGACTCTTATAATGAGTGGAACTACAGCAAATTACGTGTGTGGCAAGTAACT 1077
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1009 TCGCAAAAAGACTCTTATAATGAGTGGAACTATAGCAAATTACGTGTGTGGCAAGTAACT 1068
Query 1078 GATTACGACAAACTTGTGTTCATAGACGCAGATTTAATCATTCTCAAGAAAATTGATTAT 1137
|| ||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||| ||
Sbjct 1069 GACTACGATAAACTTGTGTTCATAGACGCAGATTTCATCATCCTCAAGAAACTTGATCAT 1128
Query 1138 CTCTTCTACTATCCACAACTCTCAGCTTCAGGCAACGACAAAGTGTTATTCAACTCCGGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 CTCTTCTACTATCCACAACTCTCAGCTTCAGGCAACGACAAAGTGTTATTCAACTCCGGA 1188
Query 1198 ATCATGGTTCTCGAGCCATCGGCATGTATGTTTAAAGATTTAATGGAGAAATCGTTCAAG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 ATCATGGTTCTCGAGCCATCGGCATGTATGTTTAAAGATTTAATGGAGAAATCGTTCAAG 1248
Query 1258 ATCGAGTCATACAACGGAGGAGACCAAGGCTTCCTTAATGAGATATTTGTATGGTGGCAC 1317
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1249 ATTGAGTCATACAACGGAGGAGACCAAGGATTCCTTAATGAGATATTTGTATGGTGGCAC 1308
Query 1318 AGGCTATCGAAACGTGTGAACACAATGAAGTACTTCGACGAAAAAAGTCAACGAAGACAC 1377
||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1309 AGGTTATCGAAACGAGTGAACACAATGAAGTACTTCGACGAAAAAAATCATCGAAGACAC 1368
Query 1378 GATCTTCCAGAGAATCTAGAAGGTCTGCACTACTTGGGATTGAAGCCATGGGTATGTTAT 1437
|||||||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1369 GATCTTCCTGAGAATGTAGAAGGTCTGCACTACTTGGGGTTGAAACCATGGGTATGTTAT 1428
Query 1438 AGAGACTACGATTGCAATTGGGACATGAGCGAACGACGCGTGTTTGCTAGCGATTCTGTG 1497
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1429 AGAGACTATGATTGCAATTGGGACATTAGCGAACGACGCGTGTTTGCAAGCGATTCTGTG 1488
Query 1498 CACGAAAAATGGTGGAAAGTATATGACAAAATGTCAGATCAGTTGAAGGGTTATTGTGGT 1557
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1489 CACGAAAAATGGTGGAAAGTGTATGACAAAATGTCAGAGCAGTTGAAAGGTTATTGTGGT 1548
Query 1558 TTAAATAAGAATATGGAGAAGAGGATTGAGAAGTGGAGAAGAATTGCTAAGAATAATAGT 1617
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1549 TTGAATAAGAATATGGAGAAGAGGATTGAGAAGTGGAGAAGAATCGCTAAGAACAATAGT 1608
Query 1618 TTGCCTGATAGGCATTGGGAGATTGAAGTGAGAGATCCTAGGAAGACGAACCTTCTTGTT 1677
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1609 TTGCCTGATAGGCATTGGGAGATTGAAGTGAGAGATCCTAGGAAGACGAATCTTCTTGTT 1668
Query 1678 CAGTGA 1683
||||||
Sbjct 1669 CAGTGA 1674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83182303065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5