BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg337776 Length=1683 Score E Sequences producing significant alignments: (Bits) Value AT1G54940.1 | Symbols: PGSIP4 | plant glycogenin-like starch in... 2534 0.0 > AT1G54940.1 | Symbols: PGSIP4 | plant glycogenin-like starch initiation protein 4 | chr1:20481690-20484541 FORWARD LENGTH=1674 Length=1674 Score = 2534 bits (1372), Expect = 0.0 Identities = 1584/1686 (94%), Gaps = 15/1686 (1%) Strand=Plus/Plus Query 1 ATGGGGACAAAAACCCATAATTCTAGAGGGAAAATCTTCATGATCTATCTAATACTAACC 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1 ATGGGGACAAAAACCCATAATTCTAGAGGGAAAATCTTCATGATCTATCTAATCCTAGTC 60 Query 61 TCATTGTCACTTCTAGTTCTAGGTTTGATCTTATCTTTTAAACCTCTTTTACGGATT-CG 119 ||||||||| | ||||||||||||||||| |||||||||||||||| |||||| | Sbjct 61 TCATTGTCA---C---TTCTAGGTTTGATCTTACCTTTTAAACCTCTTTTCCGGATTAC- 113 Query 120 ATCTCCATCTTCAACGTTACGGATTGATGATCTTCCGCCGCCGCAAGTCAACAAAAACCC 179 |||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| Sbjct 114 TTCTCCATCTTCAACGTTACGGA-T--TGATCTTCCATCGCCGCAAGTCAACAAAAACCC 170 Query 180 CAAATGG-TTCCGACTCATCCGTAACTATCTACCGGA-AAAGAGAATTCAAGTCGGCTTC 237 |||||| || ||||||||||||||||||||||| || ||| ||||| |||||||||||| Sbjct 171 GAAATGGCTT-CGACTCATCCGTAACTATCTACCAGAGAAA-AGAATCCAAGTCGGCTTC 228 Query 238 CTCAACATTGACCAGATAGAACGTGAGAGGTACGAGGCTCGTGGACCGTTGATAGTAAAG 297 || ||||| ||| ||| ||| |||||||| ||||||||||||||||||||| || | ||| Sbjct 229 CTTAACATAGACGAGAAAGAGCGTGAGAGCTACGAGGCTCGTGGACCGTTGGTACTTAAG 288 Query 298 AACATCCACGTGCCGCTTGATCCTATACCGAAGAATGTTACTTGGAAGAGTCTTTACCCG 357 |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| Sbjct 289 AACATCCACGTGCCGCTTGATCATATACCCAAGAATGTCACTTGGAAGAGTCTTTACCCG 348 Query 358 GAGTGGATCAACGAGGAAGTTTCTAACTGTCCGGAGATCCCTCTCCCTCAGCCAGAAGGT 417 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 349 GAGTGGATCAACGAGGAAGCTTCTACCTGTCCGGAGATCCCTCTCCCTCAGCCAGAAGGT 408 Query 418 TCTGATGCTAACGTGGACGTTATCGTTGCTAGAGTTCCATGTGATGGTTGGTCGGAGAAT 477 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 409 TCTGATGCTAACGTGGACGTTATTGTTGCTAGAGTTCCATGTGATGGTTGGTCGGCGAAT 468 Query 478 AAAGGGCTTAGGGATGTTTTTAGGCTTCAGGTTAACTTGGCCGTTGCGAATCTAGCCGTC 537 |||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 469 AAAGGGCTTAGGGACGTTTTTAGGCTTCAGGTTAATTTGGCCGCAGCGAATCTAGCCGTC 528 Query 538 CAAAGTGGGTTGAGGAGGGTTGATCAGGCGGTGTACGTTGTGTTCATCGGGTCATGTGGC 597 |||||||||||||||| |||| |||||||||| |||||||| |||||||| |||||||| Sbjct 529 CAAAGTGGGTTGAGGACGGTTAATCAGGCGGTCTACGTTGTATTCATCGGCTCATGTGGG 588 Query 598 CCTATGCATGAGATTTTCCCGTGCGATGAGCGCGTGAGGCGCGTGGATGATTATTGGGTG 657 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 589 CCTATGCATGAGATTTTCCCGTGCGATGAGCGCGTGATGCGCGTGGAGGATTATTGGGTG 648 Query 658 TATAAGCCTTATCTCCCAAGGTTGAAGCAGAAGCTTCTCATGCCTGTTGGTTCATGTCAC 717 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 649 TATAAGCCTTATCTCCCAAGGTTGAAGCAGAAGCTTCTCATGCCTGTTGGTTCATGTCAG 708 Query 718 ATTGCACCTCCATTTGCTCAATTTGGCCAAGAGGCATGGAGACCAAAACATAAAGACAAT 777 ||||| ||| |||||||||||||||| ||||| |||||||||||||||||| |||| ||| Sbjct 709 ATTGCTCCTTCATTTGCTCAATTTGGTCAAGAAGCATGGAGACCAAAACATGAAGATAAT 768 Query 778 CTTGTATCCGAGGCGGTCACAGCCTTACCCCGACGCTTACGGGTTGCCTACGTAACAGTA 837 |||| ||| |||| ||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 769 CTTGCATCAAAGGCAGTCACAGCCTTACCCCGTCGCTTACGGGTTGCCTACGTGACAGTA 828 Query 838 CTACATTCTTCAGAAGCCTATGTTTGTGGGGCAATAGCCTTAGCGCAAAGTATAAGACAA 897 ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 829 CTACACTCGTCAGAAGCCTATGTTTGTGGGGCAATAGCTTTAGCGCAAAGTATAAGACAA 888 Query 898 ACAGGATCTCATAAGGACATGATTCTCCTCCATGATCATACCATAACCAACAAGTCTCTT 957 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 889 TCAGGATCGCATAAGGACATGATTCTCCTCCATGATCATACCATAACCAACAAGTCTCTT 948 Query 958 ATTGGTCTCAGCTCTGCGGGATGGAATCTCCGGCTAATCGAAAGAATCCGCAGTCCTTTT 1017 |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 949 ATTGGTCTCAGCGCTGCGGGATGGAATCTCCGGCTAATCGACAGGATCCGCAGTCCTTTT 1008 Query 1018 TCGCAAAAAGACTCTTATAATGAGTGGAACTACAGCAAATTACGTGTGTGGCAAGTAACT 1077 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1009 TCGCAAAAAGACTCTTATAATGAGTGGAACTATAGCAAATTACGTGTGTGGCAAGTAACT 1068 Query 1078 GATTACGACAAACTTGTGTTCATAGACGCAGATTTAATCATTCTCAAGAAAATTGATTAT 1137 || ||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||| || Sbjct 1069 GACTACGATAAACTTGTGTTCATAGACGCAGATTTCATCATCCTCAAGAAACTTGATCAT 1128 Query 1138 CTCTTCTACTATCCACAACTCTCAGCTTCAGGCAACGACAAAGTGTTATTCAACTCCGGA 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1129 CTCTTCTACTATCCACAACTCTCAGCTTCAGGCAACGACAAAGTGTTATTCAACTCCGGA 1188 Query 1198 ATCATGGTTCTCGAGCCATCGGCATGTATGTTTAAAGATTTAATGGAGAAATCGTTCAAG 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1189 ATCATGGTTCTCGAGCCATCGGCATGTATGTTTAAAGATTTAATGGAGAAATCGTTCAAG 1248 Query 1258 ATCGAGTCATACAACGGAGGAGACCAAGGCTTCCTTAATGAGATATTTGTATGGTGGCAC 1317 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1249 ATTGAGTCATACAACGGAGGAGACCAAGGATTCCTTAATGAGATATTTGTATGGTGGCAC 1308 Query 1318 AGGCTATCGAAACGTGTGAACACAATGAAGTACTTCGACGAAAAAAGTCAACGAAGACAC 1377 ||| |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1309 AGGTTATCGAAACGAGTGAACACAATGAAGTACTTCGACGAAAAAAATCATCGAAGACAC 1368 Query 1378 GATCTTCCAGAGAATCTAGAAGGTCTGCACTACTTGGGATTGAAGCCATGGGTATGTTAT 1437 |||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1369 GATCTTCCTGAGAATGTAGAAGGTCTGCACTACTTGGGGTTGAAACCATGGGTATGTTAT 1428 Query 1438 AGAGACTACGATTGCAATTGGGACATGAGCGAACGACGCGTGTTTGCTAGCGATTCTGTG 1497 |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1429 AGAGACTATGATTGCAATTGGGACATTAGCGAACGACGCGTGTTTGCAAGCGATTCTGTG 1488 Query 1498 CACGAAAAATGGTGGAAAGTATATGACAAAATGTCAGATCAGTTGAAGGGTTATTGTGGT 1557 |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct 1489 CACGAAAAATGGTGGAAAGTGTATGACAAAATGTCAGAGCAGTTGAAAGGTTATTGTGGT 1548 Query 1558 TTAAATAAGAATATGGAGAAGAGGATTGAGAAGTGGAGAAGAATTGCTAAGAATAATAGT 1617 || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1549 TTGAATAAGAATATGGAGAAGAGGATTGAGAAGTGGAGAAGAATCGCTAAGAACAATAGT 1608 Query 1618 TTGCCTGATAGGCATTGGGAGATTGAAGTGAGAGATCCTAGGAAGACGAACCTTCTTGTT 1677 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1609 TTGCCTGATAGGCATTGGGAGATTGAAGTGAGAGATCCTAGGAAGACGAATCTTCTTGTT 1668 Query 1678 CAGTGA 1683 |||||| Sbjct 1669 CAGTGA 1674 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83182303065 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5