BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337810
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56320.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 721 0.0
> AT1G56320.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Glycine-rich protein family (TAIR:AT5G49350.2); Has
60 Blast hits to 60 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21085548-21086494
REVERSE LENGTH=701
Length=701
Score = 721 bits (390), Expect = 0.0
Identities = 460/494 (93%), Gaps = 4/494 (1%)
Strand=Plus/Plus
Query 1 ATGGATGTTCCAAAGGTTTCAAGACTTTGGCTACTCTATGCAGTGTTGCTCTTTCACAGT 60
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 36 ATGAATGTTCCAAAGGTGTCAAGACTTTGGCTACTCTATGCAGTGTTGCTCTTTGATAGT 95
Query 61 CAGAGACATTCAGTAAATGCGCAGGCTGGTGGTGTGATCGGAGGTGCAGGGATTTTGGTT 120
||||||||||||||||||||||||||||||||| | ||||| || || ||||||||||||
Sbjct 96 CAGAGACATTCAGTAAATGCGCAGGCTGGTGGTATCATCGGGGGCGCGGGGATTTTGGTT 155
Query 121 CAGAGAGCCGCATTCTGTTTCAACAATAACCTGCTCTACAGAGGGTGCAATGAAGCGTTC 180
||||||||||| |||||||| |||||||| |||||||||||||| || ||||| ||||||
Sbjct 156 CAGAGAGCCGCGTTCTGTTTTAACAATAATCTGCTCTACAGAGGATGTAATGAGGCGTTC 215
Query 181 AGACTAAACCAA-AGAGGTGAATTCAAGGTTCCACCTGAGGAAACAGACAAG-TTCTGCA 238
|||||||||||| | |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 216 AGACTAAACCAACA-AGGTGAATTCAAGGTTCCACCTGAGGAAACAGAC-AGATTCTGCA 273
Query 239 ACGGTCCTTGTTCTGCAGAAACAGAACTCGTGCTTACATGCATTAATAGCGTCATGTCTG 298
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 274 ACGGTCCTTGTTCTGCAGAAACAGAACTTGTGCTTACATGCATTAATAGTGTCATGTCTG 333
Query 299 ATTTCATATTTTACAACCGGGCTACCCCGAGAGATGTAAGGAACACCCTCCGTGGTGGCT 358
||||| | |||||||| || |||||||||||||||||||||||| |||||||||||||||
Sbjct 334 ATTTCGTGTTTTACAATCGTGCTACCCCGAGAGATGTAAGGAACGCCCTCCGTGGTGGCT 393
Query 359 GCAGCTCCTCTTTCACACGAGGGAACTTCAATGTGGGAGACTATGCTCAAGGACTCTATT 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 394 GCAGCTCCTCTTTCACACGAGGAAACTTCAATGTGGGAGACTATGCTCAAGGACTCTATT 453
Query 419 TCGGCAAGGCCGGGAAAAAGCTGCCTGGGTTGTTCGTTGGACTAGTTGTCGGGTTTGTAC 478
|||||||||| ||||||||||||||||| ||||| ||| ||||||| ||||||||||||
Sbjct 454 TCGGCAAGGCAGGGAAAAAGCTGCCTGGACTGTTCATTGTACTAGTTCTCGGGTTTGTAC 513
Query 479 CATTGATCCTGTGA 492
|| |||||||||||
Sbjct 514 CACTGATCCTGTGA 527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23459346649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5