BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337811
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56330.1 | Symbols: SAR1, ATSAR1, ATSARA1B, ATSAR1B, SAR1B |... 516 1e-145
AT1G09180.1 | Symbols: ATSAR1, ATSARA1A, SARA1A | secretion-ass... 294 6e-79
> AT1G56330.1 | Symbols: SAR1, ATSAR1, ATSARA1B, ATSAR1B, SAR1B
| secretion-associated RAS 1B | chr1:21086555-21088549 REVERSE
LENGTH=943
Length=943
Score = 516 bits (279), Expect = 1e-145
Identities = 311/326 (95%), Gaps = 4/326 (1%)
Strand=Plus/Plus
Query 310 AAGGTTGATGCTGTTGTCTACCTTGTGGATGCTTATGACAAAGAGAGATTTGCAGAGTCA 369
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 330 AAGGTTGATGCTGTTGTCTACCTTGTGGATGCTTATGACAAAGAAAGATTTGCAGAGTCA 389
Query 370 AAAAGAGAGCTTGACGCACTTCTCTCGGATGAAGCCCTTGCAACTGTTCCC-TTTCTGAT 428
|||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 390 AAAAGAGAGCTTGATGCTCTTCTCTCGGATGAAGCCCTTGCAACTGT-CCCGTTTCTGAT 448
Query 429 TCTTGGAAACAAGATTGATATCCCTTATGCAGCTTCAGAAGACGAATTGAGGTATCACTT 488
|||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 449 TCTTGGGAACAAGATTGATATCCCTTATGCAGCTTCTGAAGACGAACTGAGGTATCACTT 508
Query 489 GGGTCTCACTAACTTCACCACTGGTAAGGGCAAAGTCG-CGCTCGGAGACTCTGGTGTTC 547
||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 509 GGGTCTCACTAACTTCACCACCGGTAAGGGCAAAGT-GACGCTCGGAGACTCTGGTGTTC 567
Query 548 GCCCACTCGAGGTTTTCATGTGCAGCATTGTCCGGAAAATGGGTTATGGCGAGGGATTTA 607
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 568 GCCCACTTGAGGTCTTCATGTGCAGCATTGTCCGTAAAATGGGTTATGGCGAGGGATTCA 627
Query 608 AATGGCTCTCTCAGTACATCAACTAA 633
||||||||||||||||||||||||||
Sbjct 628 AATGGCTCTCTCAGTACATCAACTAA 653
Score = 444 bits (240), Expect = 5e-124
Identities = 254/261 (97%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1 ATGTTCTTGTTCGATTGGTTCTACGGAATCTTAGCCTCGTTAGGGTTATGGCAAAAAGAA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 72 ATGTTCTTGTTCGATTGGTTCTACGGAATCTTAGCTTCGTTAGGGTTATGGCAAAAAGAA 131
Query 61 GCAAAGATCTTGTTTCTCGGACTCGATAATGCTGGCAAAACCACCTTACTTCACATGCTC 120
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 132 GCAAAGATCTTGTTTCTCGGTCTCGATAATGCTGGCAAAACTACATTACTTCACATGCTC 191
Query 121 AAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTAGT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 AAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTAGC 251
Query 181 ATTGGGAAAATAAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGGTT 240
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 ATTGGAAAAATCAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGGTT 311
Query 241 TGGAAAGATTACTATGCCAAG 261
|||||||||||||||||||||
Sbjct 312 TGGAAAGATTACTATGCCAAG 332
> AT1G09180.1 | Symbols: ATSAR1, ATSARA1A, SARA1A | secretion-associated
RAS super family 1 | chr1:2965023-2965972 FORWARD
LENGTH=737
Length=737
Score = 294 bits (159), Expect = 6e-79
Identities = 229/263 (87%), Gaps = 4/263 (2%)
Strand=Plus/Plus
Query 1 ATGTTCTTGTTCGATTGGTTCTACGGAATCTTAGCCTCGTTAGGGTTATGGC-AAAAAGA 59
||||| || |||||||||||||| |||||||| |||||||||||||| | || |||||||
Sbjct 125 ATGTTTTTATTCGATTGGTTCTATGGAATCTTGGCCTCGTTAGGGTTGT-GCAAAAAAGA 183
Query 60 AGC-AAAGATCTTGTTTCTCGGACTCGATAATGCTGGCAAAACCACCTTACTTCACATGC 118
|| ||| ||||||||| | || ||||| ||||| || ||||| || || ||||||||||
Sbjct 184 GGCGAAA-ATCTTGTTTTTAGGCCTCGACAATGCCGGAAAAACTACTTTGCTTCACATGC 242
Query 119 TCAAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTA 178
||||||| ||||||||||||||||| ||||| || || ||||| |||||||| |||||||
Sbjct 243 TCAAAGATGAGAGATTAGTTCAGCACCAGCCAACACAGCATCCCACGTCTGAGGAACTTA 302
Query 179 GTATTGGGAAAATAAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGG 238
| ||||| ||||| || |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 303 GCATTGGCAAAATCAACTTCAAGGCCTTTGATTTGGGTGGCCATCAGATTGCTCGTAGGG 362
Query 239 TTTGGAAAGATTACTATGCCAAG 261
|||||||||| | ||||||||||
Sbjct 363 TTTGGAAAGACTGCTATGCCAAG 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5